Natrinema halophilum YPL8

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Natrialbaceae

Genus

Natrinema

Description

Natrinema halophilum YPL8 is characterized by having three distinct replicons, which are essential for its genetic stability and adaptability in extreme environments. The genomic data for this organism is cataloged under the following accessions: CP058601.1, CP084880.1, and CP084881.1. These accessions represent the complete genomic sequences that provide insights into the organism's genetic makeup. Natrinema halophilum YPL8 is a halophilic archaeon, meaning it thrives in high-salinity environments, which is a key trait that defines its ecological niche. The presence of multiple replicons may confer advantages such as increased genetic flexibility and the ability to respond to environmental stressors, which is critical for survival in its extreme habitats. The genomic architecture of Natrinema halophilum YPL8, with its three replicons, suggests a complex regulatory system that may allow for efficient adaptation to fluctuating salinity levels. Understanding the genetic framework of this organism can shed light on its mechanisms for osmoregulation and stress response, which are vital for its ecology. This knowledge could also have broader implications for biotechnology, particularly in applications that harness extremophiles for industrial processes or bioremediation in saline conditions.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyNatrialbaceae
GenusNatrinema
SpeciesNatrinema halophilum
StrainYPL8

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Natrinema halophilum YPL8, Complete Genome

Gene Summary

Adenine Count

858659 bp

Thymine Count

858285 bp

Guanine Count

1323051 bp

Cytosine Count

1319801 bp

Genome Length

4359796 bp

Protein-coding Genes

4126 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
substrate-binding domain-containing proteinHYG82_20565D4GSY9Positive4310586 - 431151532900.0
abc transporter permeaseHYG82_20570D4GSY8Positive4311518 - 431223724910.2
phosphate abc transporter atp-binding proteinHYG82_20575Q3IQI3Positive4312237 - 431301628363.3
had-ic family p-type atpaseHYG82_20580O32220Positive4313635 - 431628993397.9
duf302 domain-containing proteinHYG82_20585Not AvailablePositive4316374 - 431679014709.0
hypothetical proteinHYG82_20590Not AvailablePositive4317168 - 43173175401.37
shoct domain-containing proteinHYG82_20595Not AvailablePositive4317592 - 431796013507.8
abc transporter permeaseHYG82_20600Q9HYK9Negative4318482 - 431935430808.3
abc transporter atp-binding proteinHYG82_20605P19844Negative4319351 - 432027133182.4
arsr family transcriptional regulatorHYG82_20610Not AvailableNegative4320474 - 432138534319.1

Displaying genes 4141 – 4150 of 4674 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.