Natrinema halophilum YPL8

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Natrialbaceae

Genus

Natrinema

Description

Natrinema halophilum YPL8 is characterized by having three distinct replicons, which are essential for its genetic stability and adaptability in extreme environments. The genomic data for this organism is cataloged under the following accessions: CP058601.1, CP084880.1, and CP084881.1. These accessions represent the complete genomic sequences that provide insights into the organism's genetic makeup. Natrinema halophilum YPL8 is a halophilic archaeon, meaning it thrives in high-salinity environments, which is a key trait that defines its ecological niche. The presence of multiple replicons may confer advantages such as increased genetic flexibility and the ability to respond to environmental stressors, which is critical for survival in its extreme habitats. The genomic architecture of Natrinema halophilum YPL8, with its three replicons, suggests a complex regulatory system that may allow for efficient adaptation to fluctuating salinity levels. Understanding the genetic framework of this organism can shed light on its mechanisms for osmoregulation and stress response, which are vital for its ecology. This knowledge could also have broader implications for biotechnology, particularly in applications that harness extremophiles for industrial processes or bioremediation in saline conditions.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyNatrialbaceae
GenusNatrinema
SpeciesNatrinema halophilum
StrainYPL8

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Natrinema halophilum YPL8, Complete Genome

Gene Summary

Adenine Count

858659 bp

Thymine Count

858285 bp

Guanine Count

1323051 bp

Cytosine Count

1319801 bp

Genome Length

4359796 bp

Protein-coding Genes

4126 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
right-handed parallel beta-helix repeat-containing proteinHYG82_06790Not AvailableNegative1412737 - 141477372196.9
asparagine synthase-related proteinHYG82_06795Not AvailableNegative1415062 - 141688568471.7
arsr family transcriptional regulatorHYG82_06800Not AvailableNegative1417984 - 141858022248.4
transcription initiation factor iibHYG82_06805Q9HSF7Positive1419333 - 142029235774.7
hypothetical proteinHYG82_06810Not AvailableNegative1420285 - 14204616802.8
atp-binding proteinHYG82_06815P35164Negative1420657 - 142238463805.1
dead/deah box helicaseHYG82_06820Q5V5F7Positive1422674 - 142464173481.8
duf87 domain-containing proteinHYG82_06825Q58824Positive1424752 - 142650664834.1
degt/dnrj/eryc1/strs family aminotransferaseHYG82_06830Not AvailableNegative1426547 - 142767140398.0
alkaline phosphatase family proteinHYG82_06835Not AvailablePositive1427902 - 142953059263.0

Displaying genes 1361 – 1370 of 4674 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.