Phycicoccus endophyticus JP6SC6

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Intrasporangiaceae

Genus

Phycicoccus

Description

Phycicoccus endophyticus JP6SC6 is characterized by having a single replicon, indicating a streamlined genetic organization. This trait suggests a potentially efficient replication mechanism, which may contribute to its adaptability in various environments. The strain is cataloged under the accession number CP060712.1, providing a reference for genomic studies and further research. As an endophytic organism, Phycicoccus endophyticus JP6SC6 likely resides within plant tissues, where it may play a role in plant health and growth. Endophytes are known to enhance nutrient uptake, provide stress resistance, and produce bioactive compounds beneficial to their host plants. The specific interactions between Phycicoccus endophyticus JP6SC6 and its host, however, require further investigation to elucidate its ecological impact. Overall, the presence of Phycicoccus endophyticus JP6SC6 in plant systems highlights the importance of microbial symbionts in promoting plant resilience and health. Understanding its genetic framework and ecological contributions could pave the way for applications in agriculture and biotechnology, particularly in enhancing crop productivity and sustainability.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyIntrasporangiaceae
GenusPhycicoccus
SpeciesPhycicoccus endophyticus
StrainJP6SC6

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phycicoccus endophyticus JP6SC6, Complete Genome

Gene Summary

Adenine Count

423527 bp

Thymine Count

425360 bp

Guanine Count

1199380 bp

Cytosine Count

1190959 bp

Genome Length

3239226 bp

Protein-coding Genes

3041 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dtdp-4-dehydrorhamnose reductaseH9L10_09005P29781Negative1876652 - 187750930098.3
dtdp-glucose 4,6-dehydrataseH9L10_09010P9WN64Negative1877509 - 187851637609.8
glucose-1-phosphate thymidylyltransferase rfbaH9L10_09015A0QPF9Positive1878581 - 187945931625.7
dtdp-4-dehydrorhamnose 3,5-epimeraseH9L10_09020Q9L9E5Positive1879459 - 188006721635.6
nadp-dependent malic enzymeH9L10_09025P16468Negative1880349 - 188153941260.7
s24 family peptidaseH9L10_09030Not AvailablePositive1881666 - 188206714609.5
superoxide dismutase, niH9L10_09035P80735Positive1882109 - 188250414983.8
mannose-6-phosphate isomerase, class iH9L10_09040Q83KZ1Negative1882618 - 188377240224.4
hypothetical proteinH9L10_09045Q9HV27Negative1883809 - 188428217253.8
hypothetical proteinH9L10_09050Not AvailableNegative1884632 - 188512616841.1

Displaying genes 1801 – 1810 of 3118 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.