Treponema saccharophilum PB

Gram-negativeSpirillaanaerobic

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Treponematales

Family

Treponemataceae

Genus

Treponema

Description

Treponema saccharophilum PB is a Gram-negative, anaerobic bacterium characterized by its spirilla shape and the presence of flagella. This organism is notable for having four replicons, which may play a role in its genetic diversity and adaptability in anaerobic environments. The anaerobic nature of T. saccharophilum PB suggests its ecological niche is likely in environments devoid of oxygen, which is common for many spirochetes. The presence of flagella indicates that this species is motile, potentially allowing it to navigate through viscous environments, such as those found in soil or within the gastrointestinal tracts of animals. The specific accessions associated with T. saccharophilum PB—AP025288.1, AP025291.1, AP025289.1, and AP025290.1—provide a basis for further genomic and phylogenetic studies. These sequences can help elucidate its evolutionary relationships within the Treponema genus and its functional capabilities in anaerobic ecosystems. In summary, Treponema saccharophilum PB exemplifies a specialized anaerobic lifestyle, with its motility and genetic characteristics potentially contributing to its ecological role in nutrient cycling within anaerobic habitats.

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderTreponematales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema saccharophilum
StrainPB

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Treponema saccharophilum PB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatbovine rumen fluid; rumen of cows
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Treponema saccharophilum PB, Complete Genome

Gene Summary

Adenine Count

609161 bp

Thymine Count

598987 bp

Guanine Count

718670 bp

Cytosine Count

718364 bp

Genome Length

2645182 bp

Protein-coding Genes

2133 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative hydrogenase nickel incorporation protein hypaTRSA_11310Q21R10Negative1327540 - 132788412987.7
pyridine nucleotide-disulfide oxidoreductaseTRSA_11320Q8U195Negative1327884 - 1330610100836.0
hydrogenase accessory protein hypbTRSA_11330Q43949Negative1330666 - 133133424733.1
hypothetical proteinTRSA_11340O83461Negative1331562 - 133268342957.1
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)TRSA_11350O83460Negative1332680 - 133378039243.6
capsular polysaccharide biosynthesis proteinTRSA_11360P71052Positive1333983 - 133552456748.2
spore coat proteinTRSA_11370Q58466Positive1335546 - 133673644234.6
aldehyde oxidaseTRSA_11380O32144Positive1336729 - 133876873925.4
(2fe-2s)-binding proteinTRSA_11390Q0QLF3Positive1338791 - 133927017507.2
fad-binding proteinTRSA_11400Q7G9P4Positive1339279 - 134013631790.2

Displaying genes 1161 – 1170 of 2880 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.