Piscirickettsia salmonis LF-89

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Piscirickettsiaceae

Genus

Piscirickettsia

Description

Piscirickettsia salmonis LF-89 is a bacterial pathogen known to affect salmonids, particularly in aquaculture settings. This organism is characterized by having a total of five replicons, which contribute to its genomic structure and functionality. The genomic data for P. salmonis LF-89 can be accessed through several accession numbers: CP011849.2, CP011850.1, CP011851.1, CP011852.1, and CP013669.1. The presence of multiple replicons may influence the organism's adaptability and pathogenicity, potentially affecting its ability to survive in different environmental conditions or host immune responses. Understanding the genomic makeup of P. salmonis LF-89 can provide insights into its biological mechanisms and interactions with host organisms. In the context of aquaculture, the significance of P. salmonis LF-89 lies in its role as a pathogen that can lead to severe economic losses due to infections in fish populations. By studying its genetic characteristics and pathogenic mechanisms, effective management and control strategies can be developed to mitigate the impact of this bacterium on fish health and aquaculture productivity. This highlights the importance of genomic research in addressing challenges faced in aquatic farming systems and contributes to the broader understanding of fish disease dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyPiscirickettsiaceae
GenusPiscirickettsia
SpeciesPiscirickettsia salmonis
StrainLF-89

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Piscirickettsia salmonis LF-89, Complete Genome

Gene Summary

Adenine Count

961102 bp

Thymine Count

958496 bp

Guanine Count

634126 bp

Cytosine Count

631127 bp

Genome Length

3184851 bp

Protein-coding Genes

2981 genes

Non-Coding Genes

96 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPSLF89_07610Not AvailablePositive2794154 - 279457916460.5
lipoyl synthasePSLF89_420B8CSH7Negative2794671 - 279563036218.4
lipoate--protein ligasePSLF89_419A3QH59Negative2795627 - 279627423938.8
aminotransferase class iv family proteinPSLF89_418P54692Negative2796303 - 279715432040.8
d-alanyl-d-alanine carboxypeptidasePSLF89_417P08506Negative2797169 - 279844647099.4
sporulation proteinPSLF89_07615Not AvailableNegative2798487 - 279900218905.2
lytic murein transglycosylasePSLF89_414P41052Negative2799080 - 280014140482.2
rod shape-determining protein rodaPSLF89_413P44468Negative2800163 - 280129040842.8
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhPSLF89_410Q5QYD9Negative2803172 - 280364217295.2
ribosome silencing factorPSLF89_409Q02SH2Negative2803679 - 280401412151.6

Displaying genes 2681 – 2690 of 3497 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.