Pectobacterium aroidearum Ec106

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium aroidearum Ec106 is a Gram-negative bacterium characterized by the presence of flagella, which enable motility. This organism possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and survival in various environments. The genomic information for Pectobacterium aroidearum Ec106 can be accessed through the accession number CP166097.1. As a member of the Pectobacterium genus, P. aroidearum is known for its role as a plant pathogen, particularly affecting crops such as potatoes and other aroids. Its Gram-negative nature suggests a complex cell wall structure that may play a role in its virulence and interaction with host plants. The presence of flagella is significant as it may facilitate the bacterium's movement towards plant tissues, enhancing its ability to infect and cause disease. Understanding the traits of Pectobacterium aroidearum Ec106 provides insight into its ecological role as a pathogen. Its motility and genomic characteristics can influence its spread and impact on agricultural systems. The streamlined genomic structure may also suggest an evolutionary adaptation to its specific ecological niche, allowing it to efficiently exploit host plants. This emphasizes the importance of studying such microorganisms in the context of agricultural health and disease management strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium aroidearum
StrainEc106

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium aroidearum Ec106, Complete Genome

Gene Summary

Adenine Count

1273407 bp

Thymine Count

1281748 bp

Guanine Count

1367419 bp

Cytosine Count

1358884 bp

Genome Length

5281458 bp

Protein-coding Genes

4528 genes

Non-Coding Genes

231 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i-f crispr-associated helicase cas3fAB8809_03950Q6D0W9Negative879946 - 883254124688.0
type i-f crispr-associated endonuclease cas1fAB8809_03955Q6D0X0Negative883251 - 88423136171.2
hypothetical proteinAB8809_03960Not AvailablePositive886968 - 88782531528.9
duf1240 domain-containing proteinAB8809_03965Not AvailablePositive887818 - 88822215532.2
duf1240 domain-containing proteinAB8809_03970Not AvailablePositive888280 - 88868715364.8
duf1240 domain-containing proteinAB8809_03975Not AvailablePositive888736 - 88913715501.2
hcp family type vi secretion system effectorAB8809_03980Q9HI36Negative889193 - 88967217917.2
m48 family metallopeptidaseAB8809_03985P42597Negative889790 - 89029319544.6
aromatic amino acid transaminaseAB8809_03990P04693Negative890377 - 89157043852.3
yitt family proteinAB8809_03995P42978Negative891635 - 89224922239.0

Displaying genes 911 – 920 of 4759 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.