Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium aroidearum |
| Strain | Ec106 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1273407 bp
Thymine Count
1281748 bp
Guanine Count
1367419 bp
Cytosine Count
1358884 bp
Genome Length
5281458 bp
Protein-coding Genes
4528 genes
Non-Coding Genes
231 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system tip protein tssi/vgrg | AB8809_00295 | E0SAL0 | Negative | 68898 - 70751 | 67909.5 |
| hcp family type vi secretion system effector | AB8809_00300 | Q9HI36 | Negative | 70842 - 71360 | 19108.6 |
| valine--pyruvate transaminase | AB8809_00305 | P09053 | Negative | 71917 - 73167 | 46387.4 |
| aldose 1-epimerase family protein | AB8809_00310 | Not Available | Positive | 73561 - 74769 | 44372.7 |
| eama family transporter | AB8809_00315 | Q56072 | Positive | 74933 - 75844 | 32593.6 |
| tagaturonate reductase | AB8809_00320 | B5XQU5 | Negative | 75918 - 77363 | 54276.5 |
| zinc-binding alcohol dehydrogenase family protein | AB8809_00325 | P39400 | Negative | 77377 - 78399 | 36673.3 |
| fcd domain-containing protein | AB8809_00330 | P39399 | Positive | 78541 - 79455 | 35350.4 |
| mfs transporter | AB8809_00335 | P39398 | Positive | 79669 - 81018 | 49348.3 |
| gamma-glutamyltransferase | AB8809_00340 | P36267 | Positive | 81283 - 83061 | 62731.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
