Pseudoramibacter alactolyticus DO-4

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Eubacteriaceae

Genus

Pseudoramibacter

Description

Pseudoramibacter alactolyticus DO-4 is an anaerobic bacterium specifically inhabiting root canals. This organism is characterized by its single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in the anaerobic environment of dental pulp. The strain is cataloged under the accession number CP194340.1, which provides a reference for further genetic and taxonomic studies. The anaerobic nature of Pseudoramibacter alactolyticus DO-4 suggests that it thrives in low-oxygen conditions, which are typical of root canals, often characterized by a complex microbial community. This bacterium's presence in such environments may play a role in the ecological dynamics of dental microbiomes, potentially influencing the health of the tooth pulp and surrounding tissues. Understanding the traits of Pseudoramibacter alactolyticus DO-4 is crucial for comprehending its role in dental health and disease. Its adaptation to anaerobic conditions may allow it to persist in environments that are inhospitable to aerobic organisms, highlighting the importance of microbial diversity in maintaining ecological balance within root canals. Further research could elucidate its specific functions and interactions within the root canal microbiome, contributing to improved strategies for managing endodontic infections.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyEubacteriaceae
GenusPseudoramibacter
SpeciesPseudoramibacter alactolyticus
StrainDO-4

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatroot canals
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoramibacter alactolyticus DO-4, Complete Genome

Gene Summary

Adenine Count

570268 bp

Thymine Count

571463 bp

Guanine Count

603097 bp

Cytosine Count

609184 bp

Genome Length

2354012 bp

Protein-coding Genes

2265 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
crispr-associated endonuclease cas1ACRQ5I_00060P9WPJ4Negative8019 - 901737185.8
yjcq family proteinACRQ5I_00065Not AvailableNegative9372 - 95516837.26
hypothetical proteinACRQ5I_00070Not AvailableNegative9574 - 97537032.27
type iii-a crispr-associated ramp protein csm5ACRQ5I_00075P9WJF4Negative10832 - 1164730686.1
hypothetical proteinACRQ5I_00080Not AvailableNegative11698 - 119228482.78
type iii-a crispr-associated ramp protein csm4ACRQ5I_00085E6LHV4Negative11919 - 1286334750.6
type iii-a crispr-associated ramp protein csm3ACRQ5I_00090A0A0A7HIF0Negative12860 - 1356125362.6
type iii-a crispr-associated protein csm2ACRQ5I_00095P9WJG0Negative13567 - 1396515684.1
type iii-a crispr-associated protein cas10/csm1ACRQ5I_00100P71629Negative13952 - 1515144818.2
type iii-a crispr-associated protein cas10/csm1ACRQ5I_00105P71629Negative15127 - 1636245723.5

Displaying genes 41 – 50 of 2351 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.