Dickeya solani

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya solani is a rod-shaped bacterium notable for its pathogenicity, particularly affecting crops such as Solanum tuberosum (potato) and Daucus carota (carrot). This organism possesses flagella, which contribute to its motility and potentially facilitate its spread within plant tissues. Characterized by having two replicons, Dickeya solani exhibits a complex genomic structure that may play a role in its adaptability and virulence. It is known for causing soft rot, a significant health concern in agriculture, leading to substantial losses in crop yield and quality. The bacterium has been documented in genetic databases with specific accessions, such as CP015137.1 and CM001859.1, which provide valuable resources for further research and understanding of its genetic makeup and pathogenic mechanisms. From an ecological perspective, Dickeya solani's ability to infect prominent agricultural hosts like potatoes and carrots highlights its role in impacting food supply chains and agricultural practices. The presence of this pathogen underscores the importance of monitoring and managing bacterial diseases to ensure crop health and sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya solani
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum tuberosum, Daucus carota
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya solani , Complete Genome

Gene Summary

Adenine Count

1077308 bp

Thymine Count

1075370 bp

Guanine Count

1377156 bp

Cytosine Count

1389999 bp

Genome Length

4919833 bp

Protein-coding Genes

4073 genes

Non-Coding Genes

135 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
virulence factor mvimA4U42_18945P37168Positive4410266 - 441118934210.9
lipid ii flippase murjA4U42_18950P0AF17Positive4411414 - 441294955538.1
arginine--trna ligaseA4U42_18955C6DFD9Negative4413070 - 441480064001.8
metal-binding proteinA4U42_18960P52007Positive4415502 - 441607421023.2
copper homeostasis protein cutcA4U42_18965C6DFE1Positive4416278 - 441704227619.5
hypothetical proteinA4U42_18970Not AvailablePositive4417318 - 441761411067.3
trna 5-methoxyuridine(34) synthase cmobA4U42_18975C6DFE2Negative4417700 - 441867136672.2
trna (uridine-5-oxyacetic acid methyl ester)(34) synthase trmpA4U42_18980A8GFJ7Negative4418668 - 441941127711.3
hypothetical proteinA4U42_18985P64516Negative4419534 - 441992914976.0
hypothetical proteinA4U42_18990P37348Negative4420110 - 442092231120.2

Displaying genes 3801 – 3810 of 8420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft rotCausesPMC11149725

Displaying health effects 1 – 1 of 1 in total