Dickeya solani

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya solani is a rod-shaped bacterium notable for its pathogenicity, particularly affecting crops such as Solanum tuberosum (potato) and Daucus carota (carrot). This organism possesses flagella, which contribute to its motility and potentially facilitate its spread within plant tissues. Characterized by having two replicons, Dickeya solani exhibits a complex genomic structure that may play a role in its adaptability and virulence. It is known for causing soft rot, a significant health concern in agriculture, leading to substantial losses in crop yield and quality. The bacterium has been documented in genetic databases with specific accessions, such as CP015137.1 and CM001859.1, which provide valuable resources for further research and understanding of its genetic makeup and pathogenic mechanisms. From an ecological perspective, Dickeya solani's ability to infect prominent agricultural hosts like potatoes and carrots highlights its role in impacting food supply chains and agricultural practices. The presence of this pathogen underscores the importance of monitoring and managing bacterial diseases to ensure crop health and sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya solani
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum tuberosum, Daucus carota
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya solani , Complete Genome

Gene Summary

Adenine Count

1077308 bp

Thymine Count

1075370 bp

Guanine Count

1377156 bp

Cytosine Count

1389999 bp

Genome Length

4919833 bp

Protein-coding Genes

4073 genes

Non-Coding Genes

135 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
magnesium-translocating p-type atpaseA4U42_14395P0ABB9Negative3334080 - 3336791100371.0
transcriptional regulator nrdrA4U42_14400C6DB31Positive3337263 - 333771217111.8
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductaseA4U42_14405P25539Positive3337777 - 333888940336.5
6,7-dimethyl-8-ribityllumazine synthaseA4U42_14410C6DB33Positive3339010 - 333948316425.8
n utilization substance protein bA4U42_14415C6DB34Positive3339506 - 333992515624.8
thiamine-phosphate kinaseA4U42_14420P0AGG1Positive3339986 - 334096034814.4
phosphatidylglycerophosphatase aA4U42_14425P18200Positive3340950 - 334145318505.1
1-deoxy-d-xylulose-5-phosphate synthaseA4U42_14430C6DB37Negative3341573 - 334343567641.7
geranyl transferaseA4U42_14435P22939Negative3343469 - 334438032609.0
exodeoxyribonuclease vii small subunitA4U42_14440Q6D842Negative3344377 - 33446259149.72

Displaying genes 2891 – 2900 of 8420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft rotCausesPMC11149725

Displaying health effects 1 – 1 of 1 in total