Dickeya solani

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya solani is a rod-shaped bacterium notable for its pathogenicity, particularly affecting crops such as Solanum tuberosum (potato) and Daucus carota (carrot). This organism possesses flagella, which contribute to its motility and potentially facilitate its spread within plant tissues. Characterized by having two replicons, Dickeya solani exhibits a complex genomic structure that may play a role in its adaptability and virulence. It is known for causing soft rot, a significant health concern in agriculture, leading to substantial losses in crop yield and quality. The bacterium has been documented in genetic databases with specific accessions, such as CP015137.1 and CM001859.1, which provide valuable resources for further research and understanding of its genetic makeup and pathogenic mechanisms. From an ecological perspective, Dickeya solani's ability to infect prominent agricultural hosts like potatoes and carrots highlights its role in impacting food supply chains and agricultural practices. The presence of this pathogen underscores the importance of monitoring and managing bacterial diseases to ensure crop health and sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya solani
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum tuberosum, Daucus carota
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya solani , Complete Genome

Gene Summary

Adenine Count

1077308 bp

Thymine Count

1075370 bp

Guanine Count

1377156 bp

Cytosine Count

1389999 bp

Genome Length

4919833 bp

Protein-coding Genes

4073 genes

Non-Coding Genes

135 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter permeaseA4U42_08995P0AEQ8Positive2133187 - 213394827540.6
6-phosphogluconate phosphataseA4U42_09000P31467Negative2133953 - 213462124698.9
adenine permease purpA4U42_09005P31466Positive2134894 - 213623146386.1
hypothetical proteinA4U42_09010P0ADM9Negative2136295 - 213703527863.5
effector proteinA4U42_09015P0AAK6Negative2137353 - 213788619009.9
oxidoreductase fes-binding subunitA4U42_09020P37127Negative2137883 - 213988672740.7
udp-4-amino-4-deoxy-l-arabinose--oxoglutarate aminotransferaseA4U42_09025Q2NRV5Positive2141277 - 214241941551.0
undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferaseA4U42_09030Q2NRV6Positive2142419 - 214340236666.1
bifunctional udp-glucuronic acid oxidase/udp-4-amino-4-deoxy-l-arabinose formyltransferaseA4U42_09035A6TF98Positive2143399 - 214539074217.5
4-deoxy-4-formamido-l-arabinose- phosphoundecaprenol deformylaseA4U42_09040A4WAM2Positive2145387 - 214628633279.7

Displaying genes 1811 – 1820 of 8420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft rotCausesPMC11149725

Displaying health effects 1 – 1 of 1 in total