Sphingomonas lutea JS5

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas lutea JS5 is characterized by its rod-shaped morphology and the presence of flagella, which facilitate motility. This bacterium is notable for having two replicons, indicating a complex genomic structure that may contribute to its adaptability and survival in various environments. The strain is identified with two specific genomic accessions: CP060718.1 and CP071573.1, which can be used for further genetic and comparative studies. The ability to move via flagella suggests that Sphingomonas lutea JS5 may occupy ecological niches where motility provides a competitive advantage, such as in heterogeneous environments where nutrient availability varies. The presence of two replicons may also imply that this organism possesses mechanisms for efficient replication and regulation of its genetic material, which can be key to its survival strategies in diverse habitats. Overall, the traits of Sphingomonas lutea JS5, particularly its rod shape, motility through flagella, and unique genomic structure, indicate its potential ecological role in adapting to different environments and contributing to microbial diversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas lutea
StrainJS5

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas lutea JS5
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas lutea JS5, Complete Genome

Gene Summary

Adenine Count

417283 bp

Thymine Count

421002 bp

Guanine Count

788864 bp

Cytosine Count

790505 bp

Genome Length

2417654 bp

Protein-coding Genes

2457 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
leucyl/phenylalanyl-trna--protein transferaseH9L13_03455A5V9E5Negative660238 - 66097526338.8
arsenate reductase (glutaredoxin)H9L13_03460Q92R44Negative660989 - 66134213112.8
hypothetical proteinH9L13_03465Not AvailablePositive661527 - 66209017966.0
l,d-transpeptidase family proteinH9L13_03470P22525Positive662147 - 66352050189.6
tonb family proteinH9L13_03475Not AvailableNegative663524 - 66423424480.2
magnesium/cobalt transporter coraH9L13_03480O31543Positive664342 - 66530736431.9
acetyl-coa carboxylase biotin carboxylase subunitH9L13_03485P24182Negative665314 - 66666349435.3
acetyl-coa carboxylase biotin carboxyl carrier proteinH9L13_03490P0ABE0Negative666675 - 66717216681.2
sulfur carrier protein thisH9L13_03495Q2W3R9Positive667206 - 66752011279.5
thiazole synthaseH9L13_03500Q2G348Positive667540 - 66831327234.1

Displaying genes 691 – 700 of 4856 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.