Sphingomonas lutea JS5

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas lutea JS5 is characterized by its rod-shaped morphology and the presence of flagella, which facilitate motility. This bacterium is notable for having two replicons, indicating a complex genomic structure that may contribute to its adaptability and survival in various environments. The strain is identified with two specific genomic accessions: CP060718.1 and CP071573.1, which can be used for further genetic and comparative studies. The ability to move via flagella suggests that Sphingomonas lutea JS5 may occupy ecological niches where motility provides a competitive advantage, such as in heterogeneous environments where nutrient availability varies. The presence of two replicons may also imply that this organism possesses mechanisms for efficient replication and regulation of its genetic material, which can be key to its survival strategies in diverse habitats. Overall, the traits of Sphingomonas lutea JS5, particularly its rod shape, motility through flagella, and unique genomic structure, indicate its potential ecological role in adapting to different environments and contributing to microbial diversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas lutea
StrainJS5

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas lutea JS5
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas lutea JS5, Complete Genome

Gene Summary

Adenine Count

417283 bp

Thymine Count

421002 bp

Guanine Count

788864 bp

Cytosine Count

790505 bp

Genome Length

2417654 bp

Protein-coding Genes

2457 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ompa family proteinH9L13_03305Q926C3Negative636170 - 63662816088.8
pd40 domain-containing proteinH9L13_03310A5V876Negative636705 - 63791342085.6
ybgc/fadm family acyl-coa thioesteraseH9L13_03315P0A8Z5Negative637910 - 63835916583.8
duf3089 domain-containing proteinH9L13_03320Not AvailableNegative638456 - 63958040023.0
holliday junction branch migration dna helicase ruvbH9L13_03325A5V881Negative639667 - 64071337409.9
membrane dipeptidaseH9L13_03330P27509Positive641077 - 64219840312.1
holliday junction branch migration protein ruvaH9L13_03335A5V883Negative642327 - 64291719596.7
crossover junction endodeoxyribonuclease ruvcH9L13_03340Q5NR76Negative643007 - 64349816883.5
yebc/pmpr family dna-binding transcriptional regulatorH9L13_03345Q1GWB2Negative643603 - 64434626708.0
duf2312 domain-containing proteinH9L13_03350Q3STZ0Negative644356 - 6445989265.14

Displaying genes 661 – 670 of 4856 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.