Sphingomonas lutea JS5

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas lutea JS5 is characterized by its rod-shaped morphology and the presence of flagella, which facilitate motility. This bacterium is notable for having two replicons, indicating a complex genomic structure that may contribute to its adaptability and survival in various environments. The strain is identified with two specific genomic accessions: CP060718.1 and CP071573.1, which can be used for further genetic and comparative studies. The ability to move via flagella suggests that Sphingomonas lutea JS5 may occupy ecological niches where motility provides a competitive advantage, such as in heterogeneous environments where nutrient availability varies. The presence of two replicons may also imply that this organism possesses mechanisms for efficient replication and regulation of its genetic material, which can be key to its survival strategies in diverse habitats. Overall, the traits of Sphingomonas lutea JS5, particularly its rod shape, motility through flagella, and unique genomic structure, indicate its potential ecological role in adapting to different environments and contributing to microbial diversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas lutea
StrainJS5

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas lutea JS5
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas lutea JS5, Complete Genome

Gene Summary

Adenine Count

417283 bp

Thymine Count

421002 bp

Guanine Count

788864 bp

Cytosine Count

790505 bp

Genome Length

2417654 bp

Protein-coding Genes

2457 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive395315 - 395429Not Available
Trna-metNot AvailableNot AvailablePositive395636 - 395712Not Available
potassium channel family proteinH9L13_02065P0A333Positive395919 - 39668928327.0
yihy/virulence factor brkb family proteinH9L13_02070P75529Negative396686 - 39806750076.9
m48 family metallopeptidaseH9L13_02075P40769Negative398067 - 39922742770.1
n-formylglutamate amidohydrolaseH9L13_02080Not AvailablePositive399309 - 40010629856.2
flavohemoglobin expression-modulating qegla motif proteinH9L13_02085Not AvailablePositive400103 - 40195967874.2
glutathione synthaseH9L13_02090Q87LK1Positive401967 - 40301338307.0
atp-dependent dna ligaseH9L13_02095A0R5T2Positive403028 - 40404137238.6
alpha-ketoglutarate-dependent dioxygenase alkbH9L13_02100A1A4L5Positive403975 - 40462824359.0

Displaying genes 411 – 420 of 4856 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.