Sphingomonas lutea JS5

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas lutea JS5 is characterized by its rod-shaped morphology and the presence of flagella, which facilitate motility. This bacterium is notable for having two replicons, indicating a complex genomic structure that may contribute to its adaptability and survival in various environments. The strain is identified with two specific genomic accessions: CP060718.1 and CP071573.1, which can be used for further genetic and comparative studies. The ability to move via flagella suggests that Sphingomonas lutea JS5 may occupy ecological niches where motility provides a competitive advantage, such as in heterogeneous environments where nutrient availability varies. The presence of two replicons may also imply that this organism possesses mechanisms for efficient replication and regulation of its genetic material, which can be key to its survival strategies in diverse habitats. Overall, the traits of Sphingomonas lutea JS5, particularly its rod shape, motility through flagella, and unique genomic structure, indicate its potential ecological role in adapting to different environments and contributing to microbial diversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas lutea
StrainJS5

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas lutea JS5
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas lutea JS5, Complete Genome

Gene Summary

Adenine Count

417283 bp

Thymine Count

421002 bp

Guanine Count

788864 bp

Cytosine Count

790505 bp

Genome Length

2417654 bp

Protein-coding Genes

2457 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf3576 domain-containing proteinH9L13_01455Q9ZDB2Positive282828 - 28326215531.8
leucine--trna ligaseH9L13_01460A5VA89Positive283295 - 28581193125.3
hypothetical proteinH9L13_01465Not AvailablePositive285808 - 28630817413.9
dna polymerase iii subunit deltaH9L13_01470Not AvailablePositive286305 - 28731835579.1
yihy/virulence factor brkb family proteinH9L13_01475P0CAV8Negative287515 - 28840933056.4
para family proteinH9L13_01480P0CAV7Negative288406 - 28918527329.2
16s rrna (guanine(527)-n(7))-methyltransferase rsmgH9L13_01485Q2GC39Negative289182 - 28979322303.7
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgH9L13_01490A5VA83Negative289790 - 29145159558.9
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeH9L13_01495Q2N6I9Negative291494 - 29277444438.8
yjbe family putative metal transport proteinH9L13_01500O31603Negative292802 - 29352725270.5

Displaying genes 291 – 300 of 4856 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.