Rhizorhabdus wittichii DC-6

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Rhizorhabdaceae

Genus

Rhizorhabdus

Description

Rhizorhabdus wittichii DC-6 is a Gram-negative bacterium characterized by its rod shape. This organism possesses eight replicons, which may indicate a complex genomic architecture that can contribute to its adaptability and metabolic versatility. The availability of multiple accessions, including NZ_CP021181.1, NZ_CP021192.1, NZ_CP021185.1, NZ_CP021186.1, NZ_CP021190.1, NZ_CP021189.1, NZ_CP021191.1, and NZ_CP021182.1, enables detailed genomic analysis and comparison with other strains or species. The presence of multiple replicons can provide insights into the evolutionary strategies employed by Rhizorhabdus wittichii DC-6. Such a genomic configuration may facilitate horizontal gene transfer, enhancing the bacterium's ability to acquire beneficial traits from its environment. This adaptability is crucial for survival in various ecological niches. In a broader biological context, the traits of Rhizorhabdus wittichii DC-6 highlight its potential roles in microbial communities, possibly including soil ecosystems or aquatic environments. The rod shape and Gram-negative classification suggest that it may participate in nutrient cycling and interactions with other microorganisms, contributing to the overall functioning of the ecosystem in which it resides. Understanding the specific ecological roles of this bacterium could provide insights into its contributions to microbial diversity and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyRhizorhabdaceae
GenusRhizorhabdus
SpeciesRhizorhabdus wittichii
StrainDC-6

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizorhabdus wittichii DC-6 chromosome, complete genome.

Gene Summary

Adenine Count

959558 bp

Thymine Count

956503 bp

Guanine Count

2003659 bp

Cytosine Count

2001332 bp

Genome Length

5921052 bp

Protein-coding Genes

5416 genes

Non-Coding Genes

170 genes

# of Chromosomes/Plasmids

8

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycerophosphodiester phosphodiesteraseHY78_RS01575Not AvailableNegative301211 - 30226337771.1
grx4 family monothiol glutaredoxinHY78_RS01580Not AvailableNegative302273 - 30260211863.2
bola family proteinHY78_RS01585Not AvailableNegative302613 - 3028468252.91
duf1476 domain-containing proteinHY78_RS01590Not AvailableNegative302850 - 30317312108.2
3-isopropylmalate dehydratase small subunitHY78_RS01595Not AvailableNegative303274 - 30385221009.1
n-acyl homoserine lactonase family proteinHY78_RS01600Not AvailableNegative303852 - 30468229408.1
3-isopropylmalate dehydratase large subunitHY78_RS01605Not AvailableNegative304679 - 30611850913.9
serine hydrolase domain-containing proteinHY78_RS01610Not AvailableNegative306307 - 30764148901.0
had family acid phosphataseHY78_RS01615Not AvailableNegative307823 - 30871631155.0
antibiotic biosynthesis monooxygenase family proteinHY78_RS01620Not AvailablePositive308935 - 30926112548.0

Displaying genes 401 – 410 of 5955 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.