Rhizorhabdus wittichii DC-6

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Rhizorhabdaceae

Genus

Rhizorhabdus

Description

Rhizorhabdus wittichii DC-6 is a Gram-negative bacterium characterized by its rod shape. This organism possesses eight replicons, which may indicate a complex genomic architecture that can contribute to its adaptability and metabolic versatility. The availability of multiple accessions, including NZ_CP021181.1, NZ_CP021192.1, NZ_CP021185.1, NZ_CP021186.1, NZ_CP021190.1, NZ_CP021189.1, NZ_CP021191.1, and NZ_CP021182.1, enables detailed genomic analysis and comparison with other strains or species. The presence of multiple replicons can provide insights into the evolutionary strategies employed by Rhizorhabdus wittichii DC-6. Such a genomic configuration may facilitate horizontal gene transfer, enhancing the bacterium's ability to acquire beneficial traits from its environment. This adaptability is crucial for survival in various ecological niches. In a broader biological context, the traits of Rhizorhabdus wittichii DC-6 highlight its potential roles in microbial communities, possibly including soil ecosystems or aquatic environments. The rod shape and Gram-negative classification suggest that it may participate in nutrient cycling and interactions with other microorganisms, contributing to the overall functioning of the ecosystem in which it resides. Understanding the specific ecological roles of this bacterium could provide insights into its contributions to microbial diversity and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyRhizorhabdaceae
GenusRhizorhabdus
SpeciesRhizorhabdus wittichii
StrainDC-6

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizorhabdus wittichii DC-6 chromosome, complete genome.

Gene Summary

Adenine Count

959558 bp

Thymine Count

956503 bp

Guanine Count

2003659 bp

Cytosine Count

2001332 bp

Genome Length

5921052 bp

Protein-coding Genes

5416 genes

Non-Coding Genes

170 genes

# of Chromosomes/Plasmids

8

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methanol/ethanol family pqq-dependent dehydrogenaseHY78_RS23240Not AvailableNegative4922156 - 492389562164.5
substrate-binding periplasmic proteinHY78_RS23245Not AvailableNegative4923991 - 492484829866.1
cytochrome c-550 pedfHY78_RS23250Not AvailableNegative4924845 - 492527015064.8
pqq-dependent catabolism-associated beta-propeller proteinHY78_RS23255Not AvailablePositive4925418 - 492637433753.3
hypothetical proteinHY78_RS23260Not AvailablePositive4926493 - 492787247478.9
acetate--coa ligaseHY78_RS23265Not AvailablePositive4927979 - 492993471012.4
tonb-dependent receptorHY78_RS23270Not AvailablePositive4929993 - 493230582036.6
quinoprotein relay system zinc metallohydrolase 1HY78_RS23275Not AvailableNegative4932341 - 493329433862.6
quinoprotein dehydrogenase-associated soxyz-like carrierHY78_RS23280Not AvailableNegative4933291 - 493409128519.4
rhodaneseHY78_RS23285Not AvailablePositive4934167 - 493471519842.8

Displaying genes 4651 – 4660 of 5955 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.