Rhizorhabdus wittichii DC-6

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Rhizorhabdaceae

Genus

Rhizorhabdus

Description

Rhizorhabdus wittichii DC-6 is a Gram-negative bacterium characterized by its rod shape. This organism possesses eight replicons, which may indicate a complex genomic architecture that can contribute to its adaptability and metabolic versatility. The availability of multiple accessions, including NZ_CP021181.1, NZ_CP021192.1, NZ_CP021185.1, NZ_CP021186.1, NZ_CP021190.1, NZ_CP021189.1, NZ_CP021191.1, and NZ_CP021182.1, enables detailed genomic analysis and comparison with other strains or species. The presence of multiple replicons can provide insights into the evolutionary strategies employed by Rhizorhabdus wittichii DC-6. Such a genomic configuration may facilitate horizontal gene transfer, enhancing the bacterium's ability to acquire beneficial traits from its environment. This adaptability is crucial for survival in various ecological niches. In a broader biological context, the traits of Rhizorhabdus wittichii DC-6 highlight its potential roles in microbial communities, possibly including soil ecosystems or aquatic environments. The rod shape and Gram-negative classification suggest that it may participate in nutrient cycling and interactions with other microorganisms, contributing to the overall functioning of the ecosystem in which it resides. Understanding the specific ecological roles of this bacterium could provide insights into its contributions to microbial diversity and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyRhizorhabdaceae
GenusRhizorhabdus
SpeciesRhizorhabdus wittichii
StrainDC-6

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizorhabdus wittichii DC-6 chromosome, complete genome.

Gene Summary

Adenine Count

959558 bp

Thymine Count

956503 bp

Guanine Count

2003659 bp

Cytosine Count

2001332 bp

Genome Length

5921052 bp

Protein-coding Genes

5416 genes

Non-Coding Genes

170 genes

# of Chromosomes/Plasmids

8

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinHY78_RS20940Not AvailablePositive4393483 - 439400417914.1
hypothetical proteinHY78_RS20945Not AvailablePositive4394037 - 43943129852.51
bifunctional dna-binding transcriptional regulator/o6-methylguanine-dna methyltransferase adaHY78_RS20950Not AvailablePositive4394402 - 439545737245.4
sensor domain-containing diguanylate cyclaseHY78_RS20955Not AvailableNegative4395435 - 439668245660.2
eama family transporterHY78_RS20960Not AvailablePositive4396825 - 439775732465.6
maue/doxx family redox-associated membrane proteinHY78_RS20965Not AvailableNegative4397717 - 439846027060.5
merr family dna-binding proteinHY78_RS20970Not AvailablePositive4398514 - 439894815408.7
imua family proteinHY78_RS20975Not AvailablePositive4400087 - 440089327385.0
y-family dna polymeraseHY78_RS20980Not AvailablePositive4400784 - 440233156453.1
error-prone dna polymeraseHY78_RS20985Not AvailablePositive4402328 - 4405963134657.0

Displaying genes 4191 – 4200 of 5955 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.