Rhizorhabdus wittichii DC-6

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Rhizorhabdaceae

Genus

Rhizorhabdus

Description

Rhizorhabdus wittichii DC-6 is a Gram-negative bacterium characterized by its rod shape. This organism possesses eight replicons, which may indicate a complex genomic architecture that can contribute to its adaptability and metabolic versatility. The availability of multiple accessions, including NZ_CP021181.1, NZ_CP021192.1, NZ_CP021185.1, NZ_CP021186.1, NZ_CP021190.1, NZ_CP021189.1, NZ_CP021191.1, and NZ_CP021182.1, enables detailed genomic analysis and comparison with other strains or species. The presence of multiple replicons can provide insights into the evolutionary strategies employed by Rhizorhabdus wittichii DC-6. Such a genomic configuration may facilitate horizontal gene transfer, enhancing the bacterium's ability to acquire beneficial traits from its environment. This adaptability is crucial for survival in various ecological niches. In a broader biological context, the traits of Rhizorhabdus wittichii DC-6 highlight its potential roles in microbial communities, possibly including soil ecosystems or aquatic environments. The rod shape and Gram-negative classification suggest that it may participate in nutrient cycling and interactions with other microorganisms, contributing to the overall functioning of the ecosystem in which it resides. Understanding the specific ecological roles of this bacterium could provide insights into its contributions to microbial diversity and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyRhizorhabdaceae
GenusRhizorhabdus
SpeciesRhizorhabdus wittichii
StrainDC-6

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizorhabdus wittichii DC-6 chromosome, complete genome.

Gene Summary

Adenine Count

959558 bp

Thymine Count

956503 bp

Guanine Count

2003659 bp

Cytosine Count

2001332 bp

Genome Length

5921052 bp

Protein-coding Genes

5416 genes

Non-Coding Genes

170 genes

# of Chromosomes/Plasmids

8

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf1489 family proteinHY78_RS06625Not AvailableNegative1379968 - 138038415128.4
magnesium transporterHY78_RS06630Not AvailableNegative1380407 - 138182250613.1
dha2 family efflux mfs transporter permease subunitHY78_RS06635Not AvailableNegative1381908 - 138347656079.8
peptidylprolyl isomeraseHY78_RS06640Not AvailablePositive1383611 - 138407816541.6
lysr substrate-binding domain-containing proteinHY78_RS06645Not AvailableNegative1384295 - 138517032364.2
class i sam-dependent methyltransferaseHY78_RS06650Not AvailablePositive1385560 - 138618322647.2
dna-directed rna polymerase subunit omegaHY78_RS06655Not AvailablePositive1386282 - 138662312313.4
rela/spot family proteinHY78_RS06660Not AvailablePositive1386789 - 138889478611.3
fad-dependent monooxygenaseHY78_RS06665Not AvailablePositive1389061 - 139082163087.1
2og-fe dioxygenase family proteinHY78_RS06670Not AvailableNegative1390802 - 139152726796.7

Displaying genes 1411 – 1420 of 5955 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.