Rhizorhabdus wittichii DC-6

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Rhizorhabdaceae

Genus

Rhizorhabdus

Description

Rhizorhabdus wittichii DC-6 is a Gram-negative bacterium characterized by its rod shape. This organism possesses eight replicons, which may indicate a complex genomic architecture that can contribute to its adaptability and metabolic versatility. The availability of multiple accessions, including NZ_CP021181.1, NZ_CP021192.1, NZ_CP021185.1, NZ_CP021186.1, NZ_CP021190.1, NZ_CP021189.1, NZ_CP021191.1, and NZ_CP021182.1, enables detailed genomic analysis and comparison with other strains or species. The presence of multiple replicons can provide insights into the evolutionary strategies employed by Rhizorhabdus wittichii DC-6. Such a genomic configuration may facilitate horizontal gene transfer, enhancing the bacterium's ability to acquire beneficial traits from its environment. This adaptability is crucial for survival in various ecological niches. In a broader biological context, the traits of Rhizorhabdus wittichii DC-6 highlight its potential roles in microbial communities, possibly including soil ecosystems or aquatic environments. The rod shape and Gram-negative classification suggest that it may participate in nutrient cycling and interactions with other microorganisms, contributing to the overall functioning of the ecosystem in which it resides. Understanding the specific ecological roles of this bacterium could provide insights into its contributions to microbial diversity and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyRhizorhabdaceae
GenusRhizorhabdus
SpeciesRhizorhabdus wittichii
StrainDC-6

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizorhabdus wittichii DC-6 chromosome, complete genome.

Gene Summary

Adenine Count

959558 bp

Thymine Count

956503 bp

Guanine Count

2003659 bp

Cytosine Count

2001332 bp

Genome Length

5921052 bp

Protein-coding Genes

5416 genes

Non-Coding Genes

170 genes

# of Chromosomes/Plasmids

8

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aminotransferase class ivHY78_RS06525Not AvailablePositive1356774 - 135739722523.0
pyridoxal phosphate-dependent aminotransferaseHY78_RS06530Not AvailablePositive1357514 - 135871642921.2
peptide-methionine (s)-s-oxide reductase msraHY78_RS06535Not AvailablePositive1358924 - 135966126179.3
ggdef domain-containing proteinHY78_RS06540Not AvailableNegative1359646 - 13599008770.63
is21-like element helper atpase istbHY78_RS06545Not AvailableNegative1360070 - 136079826672.3
is21 family transposaseHY78_RS06550Not AvailableNegative1360785 - 136229957437.9
sulfonate abc transporter permeaseHY78_RS06555Not AvailableNegative1362402 - 136336735775.0
ligase-associated dna damage response endonuclease pdemHY78_RS06560Not AvailableNegative1363462 - 136412423770.8
sulfite exporter taue/safe family proteinHY78_RS06565Not AvailablePositive1364257 - 136517131727.4
tigr02186 family proteinHY78_RS06570Not AvailablePositive1365168 - 136592627410.2

Displaying genes 1391 – 1400 of 5955 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.