Variovorax paradoxus B4

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax paradoxus B4 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This organism is notable for possessing two replicons, which contributes to its genetic diversity and adaptability in various environments. The two replicons allow for a more complex regulation of genes, potentially enhancing its survival in fluctuating conditions. The strain B4 is part of the broader Variovorax genus, which is known for its ability to degrade a wide range of organic compounds. This trait highlights its ecological significance, particularly in bioremediation processes where the breakdown of pollutants is crucial. The strain is cataloged under the accessions NC_022247.1 and NC_022234.1, which relate to its genomic sequences and provide essential data for further research. Variovorax paradoxus B4's aerobic lifestyle indicates its reliance on oxygen for growth, which positions it within ecosystems where oxygen is readily available. This trait may influence its interactions with other microbial communities and its role in nutrient cycling. Overall, the characteristics of Variovorax paradoxus B4 suggest that it plays an important role in its ecological niche, particularly in organic matter decomposition and environmental remediation efforts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax paradoxus
StrainB4

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax paradoxus B4 chromosome 1, complete sequence.

Gene Summary

Adenine Count

950862 bp

Thymine Count

949414 bp

Guanine Count

1945675 bp

Cytosine Count

1949310 bp

Genome Length

5795261 bp

Protein-coding Genes

5451 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent dna ligaseVAPA_RS24715Not AvailableNegative5308728 - 531038361628.4
ligase-associated dna damage response exonucleaseVAPA_RS24720Not AvailableNegative5310380 - 531152841111.6
lysr family transcriptional regulatorVAPA_RS24725Not AvailablePositive5311599 - 531250432733.1
ring-opening amidohydrolaseVAPA_RS24730Not AvailablePositive5312643 - 531381539464.5
fad-dependent oxidoreductaseVAPA_RS24735Not AvailablePositive5313979 - 531519343014.6
voc family proteinVAPA_RS24740Not AvailablePositive5315190 - 531570217927.3
abc transporter substrate-binding proteinVAPA_RS24745Not AvailablePositive5315733 - 531674035527.1
abc transporter atp-binding proteinVAPA_RS24750Not AvailablePositive5316749 - 531758231609.4
abc transporter permeaseVAPA_RS24755Not AvailablePositive5317579 - 531835527870.8
oxalurate catabolism protein hpxzVAPA_RS24760Not AvailablePositive5318364 - 531875314508.1

Displaying genes 5041 – 5050 of 6839 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.