Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | B4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
950862 bp
Thymine Count
949414 bp
Guanine Count
1945675 bp
Cytosine Count
1949310 bp
Genome Length
5795261 bp
Protein-coding Genes
5451 genes
Non-Coding Genes
71 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had-iib family hydrolase | VAPA_RS23770 | Not Available | Positive | 5102738 - 5103574 | 30119.6 |
| tripartite tricarboxylate transporter substrate binding protein | VAPA_RS23775 | Not Available | Negative | 5103606 - 5104580 | 34525.9 |
| histone deacetylase family protein | VAPA_RS23780 | Not Available | Negative | 5104682 - 5105731 | 37527.2 |
| ornithine cyclodeaminase | VAPA_RS23785 | Not Available | Negative | 5105740 - 5106789 | 37929.7 |
| plp-dependent aminotransferase family protein | VAPA_RS23790 | Not Available | Negative | 5106950 - 5108359 | 52082.1 |
| 4-aminobutyrate--2-oxoglutarate transaminase | VAPA_RS23795 | Not Available | Positive | 5108523 - 5109815 | 45412.6 |
| abc transporter atp-binding protein | VAPA_RS23800 | Not Available | Positive | 5109839 - 5110933 | 39820.1 |
| abc transporter substrate-binding protein | VAPA_RS23805 | Not Available | Positive | 5110986 - 5112014 | 37539.8 |
| abc transporter permease | VAPA_RS23810 | Not Available | Positive | 5112034 - 5113290 | 45545.6 |
| abc transporter permease | VAPA_RS23815 | Not Available | Positive | 5113313 - 5114131 | 29457.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
