Variovorax paradoxus B4

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax paradoxus B4 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This organism is notable for possessing two replicons, which contributes to its genetic diversity and adaptability in various environments. The two replicons allow for a more complex regulation of genes, potentially enhancing its survival in fluctuating conditions. The strain B4 is part of the broader Variovorax genus, which is known for its ability to degrade a wide range of organic compounds. This trait highlights its ecological significance, particularly in bioremediation processes where the breakdown of pollutants is crucial. The strain is cataloged under the accessions NC_022247.1 and NC_022234.1, which relate to its genomic sequences and provide essential data for further research. Variovorax paradoxus B4's aerobic lifestyle indicates its reliance on oxygen for growth, which positions it within ecosystems where oxygen is readily available. This trait may influence its interactions with other microbial communities and its role in nutrient cycling. Overall, the characteristics of Variovorax paradoxus B4 suggest that it plays an important role in its ecological niche, particularly in organic matter decomposition and environmental remediation efforts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax paradoxus
StrainB4

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax paradoxus B4 chromosome 1, complete sequence.

Gene Summary

Adenine Count

950862 bp

Thymine Count

949414 bp

Guanine Count

1945675 bp

Cytosine Count

1949310 bp

Genome Length

5795261 bp

Protein-coding Genes

5451 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf2894 domain-containing proteinVAPA_RS16475Not AvailableNegative3533236 - 353387723485.9
ompa family proteinVAPA_RS16480Not AvailableNegative3533888 - 353454423238.7
duf802 domain-containing proteinVAPA_RS16485Not AvailableNegative3534544 - 353663474014.9
duf3348 domain-containing proteinVAPA_RS16490Not AvailableNegative3536627 - 353731925159.4
duf2867 domain-containing proteinVAPA_RS16495Not AvailableNegative3537441 - 353797419319.2
hypothetical proteinVAPA_RS16500Not AvailableNegative3537971 - 35381988668.25
nudix hydrolaseVAPA_RS16505Not AvailableNegative3538195 - 353863516395.5
dna-3-methyladenine glycosylase iVAPA_RS16510Not AvailablePositive3538737 - 353931221143.4
hypothetical proteinVAPA_RS16515Not AvailableNegative3539417 - 353975811321.2
bifunctional 2-methylcitrate dehydratase/aconitate hydrataseVAPA_RS16520Not AvailableNegative3540013 - 354146753362.3

Displaying genes 3381 – 3390 of 6839 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.