Variovorax paradoxus B4

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax paradoxus B4 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This organism is notable for possessing two replicons, which contributes to its genetic diversity and adaptability in various environments. The two replicons allow for a more complex regulation of genes, potentially enhancing its survival in fluctuating conditions. The strain B4 is part of the broader Variovorax genus, which is known for its ability to degrade a wide range of organic compounds. This trait highlights its ecological significance, particularly in bioremediation processes where the breakdown of pollutants is crucial. The strain is cataloged under the accessions NC_022247.1 and NC_022234.1, which relate to its genomic sequences and provide essential data for further research. Variovorax paradoxus B4's aerobic lifestyle indicates its reliance on oxygen for growth, which positions it within ecosystems where oxygen is readily available. This trait may influence its interactions with other microbial communities and its role in nutrient cycling. Overall, the characteristics of Variovorax paradoxus B4 suggest that it plays an important role in its ecological niche, particularly in organic matter decomposition and environmental remediation efforts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax paradoxus
StrainB4

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax paradoxus B4 chromosome 1, complete sequence.

Gene Summary

Adenine Count

950862 bp

Thymine Count

949414 bp

Guanine Count

1945675 bp

Cytosine Count

1949310 bp

Genome Length

5795261 bp

Protein-coding Genes

5451 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
omph family outer membrane proteinVAPA_RS14490Not AvailableNegative3106906 - 310744820253.0
outer membrane protein assembly factor bamaVAPA_RS14495Not AvailableNegative3107449 - 310988489947.2
rip metalloprotease rsepVAPA_RS14500Not AvailableNegative3109923 - 311129349550.7
1-deoxy-d-xylulose-5-phosphate reductoisomeraseVAPA_RS14505Not AvailableNegative3111318 - 311250541938.6
phosphatidate cytidylyltransferaseVAPA_RS14510Not AvailableNegative3112502 - 311334730268.2
polyprenyl diphosphate synthaseVAPA_RS14515Not AvailableNegative3113376 - 311411927032.3
ribosome recycling factorVAPA_RS14520Not AvailableNegative3114128 - 311469720941.2
ump kinaseVAPA_RS14525Not AvailableNegative3114711 - 311543325406.0
translation elongation factor tsVAPA_RS14530Not AvailableNegative3115536 - 311645932454.1
30s ribosomal protein s2VAPA_RS14535Not AvailableNegative3116541 - 311729627533.3

Displaying genes 2981 – 2990 of 6839 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.