Variovorax paradoxus B4

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax paradoxus B4 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This organism is notable for possessing two replicons, which contributes to its genetic diversity and adaptability in various environments. The two replicons allow for a more complex regulation of genes, potentially enhancing its survival in fluctuating conditions. The strain B4 is part of the broader Variovorax genus, which is known for its ability to degrade a wide range of organic compounds. This trait highlights its ecological significance, particularly in bioremediation processes where the breakdown of pollutants is crucial. The strain is cataloged under the accessions NC_022247.1 and NC_022234.1, which relate to its genomic sequences and provide essential data for further research. Variovorax paradoxus B4's aerobic lifestyle indicates its reliance on oxygen for growth, which positions it within ecosystems where oxygen is readily available. This trait may influence its interactions with other microbial communities and its role in nutrient cycling. Overall, the characteristics of Variovorax paradoxus B4 suggest that it plays an important role in its ecological niche, particularly in organic matter decomposition and environmental remediation efforts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax paradoxus
StrainB4

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax paradoxus B4 chromosome 1, complete sequence.

Gene Summary

Adenine Count

950862 bp

Thymine Count

949414 bp

Guanine Count

1945675 bp

Cytosine Count

1949310 bp

Genome Length

5795261 bp

Protein-coding Genes

5451 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trap transporter large permease subunitVAPA_RS10240Not AvailableNegative2202458 - 220435366354.7
trap transporter substrate-binding proteinVAPA_RS10245Not AvailableNegative2204360 - 220537936919.4
laci family dna-binding transcriptional regulatorVAPA_RS10250Not AvailablePositive2205504 - 220655938305.1
4-hydroxy-2-oxoheptanedioate aldolaseVAPA_RS10255Not AvailableNegative2206585 - 220738827653.3
nad-dependent succinate-semialdehyde dehydrogenaseVAPA_RS10260Not AvailableNegative2207426 - 220889551785.8
uxaa family hydrolaseVAPA_RS10265Not AvailableNegative2208931 - 221045454097.7
tripartite tricarboxylate transporter substrate binding proteinVAPA_RS10270Not AvailableNegative2210454 - 221144935419.6
lysr substrate-binding domain-containing proteinVAPA_RS10275Not AvailablePositive2211584 - 221252534644.6
crp/fnr family transcriptional regulatorVAPA_RS10280Not AvailablePositive2212591 - 221303115864.2
nudix domain-containing proteinVAPA_RS10285Not AvailableNegative2213040 - 221434146380.4

Displaying genes 2111 – 2120 of 6839 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.