Vibrio variabilis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio variabilis is a bacterium characterized by having a single replicon, which is indicative of its genomic organization. The organism is cataloged under the accession number BBMS00000000.1, which allows for its identification within genomic databases. Vibrio species are typically associated with aquatic environments, and many are known for their role in marine ecosystems. While specific ecological roles or interactions of Vibrio variabilis are not detailed in the provided data, the presence of Vibrio species in marine environments often suggests a contribution to nutrient cycling and interactions with other marine organisms. The single replicon trait may imply a streamlined genetic structure, potentially influencing its adaptability and ecological interactions. In microbial ecology, the genomic architecture can affect how a species interacts with its environment, including its ability to respond to changes in nutrient availability or to compete with other microorganisms. In summary, Vibrio variabilis is defined by its single replicon structure and is cataloged under the accession BBMS00000000.1. Its presence in aquatic environments aligns with the ecological roles often attributed to Vibrio species, although specific insights into its interactions within these ecosystems remain to be further elucidated.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio variabilis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio variabilis
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio variabilis DNA, contig: contig00208, strain: JCM 19239,

Gene Summary

Adenine Count

1563099 bp

Thymine Count

1571508 bp

Guanine Count

1340550 bp

Cytosine Count

1322370 bp

Genome Length

5797527 bp

Protein-coding Genes

7911 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinJCM19239_1774Not AvailableNegative4513146 - 45133918925.0
predicted p-loop-containing kinaseJCM19239_1775Not AvailableNegative4513388 - 451398722210.9
pts system nitrogen-specific iia componentJCM19239_1776Not AvailableNegative4514006 - 45141435185.24
pts system nitrogen-specific iia componentJCM19239_1777Not AvailableNegative4514113 - 451445112024.4
ribosome hibernation protein yhbhJCM19239_1778Not AvailableNegative4514453 - 451474011028.1
rna polymerase sigma-54 factor rponJCM19239_1779Not AvailableNegative4514766 - 451521816765.2
rna polymerase sigma-54 factor rponJCM19239_1780Not AvailableNegative4515295 - 451593624176.4
lipopolysaccharide abc transporter atp-binding protein lptbJCM19239_1781Not AvailableNegative4516276 - 451700126738.3
lpta protein essential for lps transport across the periplasmJCM19239_1782Not AvailableNegative4517010 - 451750718105.6
uncharacterized protein yrbkJCM19239_1783Not AvailableNegative4517488 - 451805120942.7

Displaying genes 6251 – 6260 of 8006 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.