Vibrio variabilis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio variabilis is a bacterium characterized by having a single replicon, which is indicative of its genomic organization. The organism is cataloged under the accession number BBMS00000000.1, which allows for its identification within genomic databases. Vibrio species are typically associated with aquatic environments, and many are known for their role in marine ecosystems. While specific ecological roles or interactions of Vibrio variabilis are not detailed in the provided data, the presence of Vibrio species in marine environments often suggests a contribution to nutrient cycling and interactions with other marine organisms. The single replicon trait may imply a streamlined genetic structure, potentially influencing its adaptability and ecological interactions. In microbial ecology, the genomic architecture can affect how a species interacts with its environment, including its ability to respond to changes in nutrient availability or to compete with other microorganisms. In summary, Vibrio variabilis is defined by its single replicon structure and is cataloged under the accession BBMS00000000.1. Its presence in aquatic environments aligns with the ecological roles often attributed to Vibrio species, although specific insights into its interactions within these ecosystems remain to be further elucidated.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio variabilis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio variabilis
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio variabilis DNA, contig: contig00208, strain: JCM 19239,

Gene Summary

Adenine Count

1563099 bp

Thymine Count

1571508 bp

Guanine Count

1340550 bp

Cytosine Count

1322370 bp

Genome Length

5797527 bp

Protein-coding Genes

7911 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna polymerase iii beta subunitJCM19239_1830Not AvailableNegative4285156 - 428625640839.7
chromosomal replication initiator protein dnaaJCM19239_1831Not AvailableNegative4286344 - 428714730792.9
chromosomal replication initiator protein dnaaJCM19239_1832Not AvailableNegative4287177 - 428768018889.9
hypothetical proteinJCM19239_1833Not AvailablePositive4287679 - 42878044567.37
amino acid abc transporter periplasmic amino acid-binding portionJCM19239_1834Not AvailablePositive4288142 - 428890328150.5
amino acid abc transporter permease proteinJCM19239_1835Not AvailablePositive4288972 - 428964325214.7
atp-dependent rna helicase yejhJCM19239_6548Not AvailableNegative4289933 - 429128850723.7
ribosomal small subunit pseudouridine synthase aJCM19239_6549Not AvailablePositive4291359 - 429205726510.7
mfs family multidrug transport proteinJCM19239_6550Not AvailablePositive4292274 - 429275016453.4
mfs family multidrug transport proteinJCM19239_6551Not AvailablePositive4292747 - 429347826000.7

Displaying genes 5961 – 5970 of 8006 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.