Vibrio variabilis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio variabilis is a bacterium characterized by having a single replicon, which is indicative of its genomic organization. The organism is cataloged under the accession number BBMS00000000.1, which allows for its identification within genomic databases. Vibrio species are typically associated with aquatic environments, and many are known for their role in marine ecosystems. While specific ecological roles or interactions of Vibrio variabilis are not detailed in the provided data, the presence of Vibrio species in marine environments often suggests a contribution to nutrient cycling and interactions with other marine organisms. The single replicon trait may imply a streamlined genetic structure, potentially influencing its adaptability and ecological interactions. In microbial ecology, the genomic architecture can affect how a species interacts with its environment, including its ability to respond to changes in nutrient availability or to compete with other microorganisms. In summary, Vibrio variabilis is defined by its single replicon structure and is cataloged under the accession BBMS00000000.1. Its presence in aquatic environments aligns with the ecological roles often attributed to Vibrio species, although specific insights into its interactions within these ecosystems remain to be further elucidated.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio variabilis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio variabilis
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio variabilis DNA, contig: contig00208, strain: JCM 19239,

Gene Summary

Adenine Count

1563099 bp

Thymine Count

1571508 bp

Guanine Count

1340550 bp

Cytosine Count

1322370 bp

Genome Length

5797527 bp

Protein-coding Genes

7911 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadph-dependent glyceraldehyde-3-phosphate dehydrogenaseJCM19239_406Not AvailablePositive3797767 - 379867533605.3
nadph-dependent glyceraldehyde-3-phosphate dehydrogenaseJCM19239_407Not AvailablePositive3798681 - 379922619797.3
glycosidaseJCM19239_408Not AvailableNegative3799295 - 379966313219.3
neopullulanaseJCM19239_409Not AvailableNegative3799792 - 37999505774.97
neopullulanaseJCM19239_410Not AvailableNegative3799905 - 380047121172.5
neopullulanaseJCM19239_411Not AvailableNegative3800450 - 380084214161.6
transcriptional regulator lysr familyJCM19239_412Not AvailableNegative3801061 - 380195133284.7
flp pilus assembly proteinJCM19239_413Not AvailablePositive3802422 - 38026166706.14
type iv prepilin peptidase tadv/cpaaJCM19239_414Not AvailablePositive3802741 - 380310913320.1
flp pilus assembly protein rcpc/cpabJCM19239_415Not AvailablePositive3803133 - 380396631039.3

Displaying genes 5301 – 5310 of 8006 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.