Vibrio variabilis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio variabilis is a bacterium characterized by having a single replicon, which is indicative of its genomic organization. The organism is cataloged under the accession number BBMS00000000.1, which allows for its identification within genomic databases. Vibrio species are typically associated with aquatic environments, and many are known for their role in marine ecosystems. While specific ecological roles or interactions of Vibrio variabilis are not detailed in the provided data, the presence of Vibrio species in marine environments often suggests a contribution to nutrient cycling and interactions with other marine organisms. The single replicon trait may imply a streamlined genetic structure, potentially influencing its adaptability and ecological interactions. In microbial ecology, the genomic architecture can affect how a species interacts with its environment, including its ability to respond to changes in nutrient availability or to compete with other microorganisms. In summary, Vibrio variabilis is defined by its single replicon structure and is cataloged under the accession BBMS00000000.1. Its presence in aquatic environments aligns with the ecological roles often attributed to Vibrio species, although specific insights into its interactions within these ecosystems remain to be further elucidated.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio variabilis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio variabilis
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio variabilis DNA, contig: contig00208, strain: JCM 19239,

Gene Summary

Adenine Count

1563099 bp

Thymine Count

1571508 bp

Guanine Count

1340550 bp

Cytosine Count

1322370 bp

Genome Length

5797527 bp

Protein-coding Genes

7911 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tsab proteinJCM19239_7588Not AvailableNegative34627 - 347584712.72
ding family atp-dependent helicase yoaaJCM19239_7589Not AvailableNegative34759 - 349476887.3
ding family atp-dependent helicase yoaaJCM19239_7590Not AvailableNegative34944 - 3635652584.9
ding family atp-dependent helicase yoaaJCM19239_7591Not AvailableNegative36365 - 3671512443.1
formyltetrahydrofolate deformylaseJCM19239_7592Not AvailablePositive37056 - 3788931423.7
hypothetical proteinJCM19239_7593Not AvailableNegative38035 - 3877527634.5
protein yecmJCM19239_7594Not AvailableNegative38936 - 3956523463.0
arginyl-trna synthetaseJCM19239_7595Not AvailablePositive39707 - 4144063947.0
diadenosine tetraphosphate (ap4a) hydrolase and other hit family hydrolasesJCM19239_7596Not AvailablePositive41528 - 4195616161.4
ferrous iron transport protein cJCM19239_7597Not AvailableNegative42019 - 422498550.37

Displaying genes 111 – 120 of 8006 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.