Escherichia coli strain KCJK8465

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain KCJK8465 is a Gram-negative, rod-shaped bacterium characterized by its mobility and presence of flagella. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. It typically resides in host-associated habitats, demonstrating a free-living biotic relationship with a diverse range of hosts, including Homo sapiens, Gallus gallus, Bos taurus, and various other vertebrates and invertebrates. Optimal growth occurs at 37°C, indicating its mesophilic nature. KCJK8465 possesses a single replicon and is encapsulated by two membranes, typical of Gram-negative bacteria. The strain is associated with numerous health issues, particularly in humans, including urinary tract infections (UTIs), gastrointestinal infections, and more severe conditions such as neonatal meningitis and hemolytic uremic syndrome (HUS). These health effects underscore its pathogenic potential, particularly in vulnerable populations. The presence of E. coli strain KCJK8465 in a variety of hosts suggests its ecological versatility and adaptability. Given its role in numerous diseases, it highlights the importance of monitoring and managing E. coli strains in both human health and agricultural contexts. The strain's association with multiple species, including livestock and humans, further emphasizes the interconnectedness of ecosystems and the potential for zoonotic disease transmission. Understanding the pathogenic mechanisms of such strains is crucial for developing effective prevention and treatment strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain KCJK8465

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain KCJK8465
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain KCJK8465 NODE_351_length_202_cov_9.106667,

Gene Summary

Adenine Count

1157199 bp

Thymine Count

1161975 bp

Guanine Count

1201352 bp

Cytosine Count

1202413 bp

Genome Length

4722941 bp

Protein-coding Genes

4342 genes

Non-Coding Genes

253 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutamate synthase large subunitFIB71_01745Not AvailableNegative368645 - 373105163320.0
tigr01212 family radical sam proteinFIB71_01750Not AvailablePositive373780 - 37470934680.6
aerobic respiration two-component sensor histidine kinase arcbFIB71_01755Not AvailablePositive374805 - 37714187988.0
isoprenoid biosynthesis glyoxalase elbbFIB71_01760Not AvailablePositive377371 - 37802422996.9
monofunctional biosynthetic peptidoglycan transglycosylaseFIB71_01765Not AvailablePositive378021 - 37874927343.1
phop regulatory network protein yrblFIB71_01770Not AvailableNegative378746 - 37937824373.4
pts phosphocarrier protein nprFIB71_01775Not AvailableNegative379591 - 3798639810.71
rnase adapter rapzFIB71_01780Not AvailableNegative379860 - 38071432494.2
pts iia-like nitrogen regulatory protein ptsnFIB71_01785Not AvailableNegative380760 - 38125117960.6
ribosome hibernation promoting factorFIB71_01790Not AvailableNegative381369 - 38165610750.9

Displaying genes 531 – 540 of 4595 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total