Escherichia coli strain KCJK8504

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain KCJK8504 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic oxygen requirement and is capable of mobility due to the presence of flagella. This strain is mesophilic, with an optimal growth temperature of 37°C. It is characterized by its arrangement in pairs and singles, and it possesses a single replicon and two membranes. KCJK8504 is predominantly host-associated, with a diverse range of potential hosts including humans (Homo sapiens), various livestock (such as Bos taurus and Sus scrofa), avian species (like Gallus gallus and Meleagris gallopavo), as well as numerous other vertebrates and invertebrates. This broad host range highlights its adaptability and ecological versatility. The strain is known for its significant health impacts, particularly in humans, where it is associated with various clinical conditions such as urinary tract infections (UTIs), gastrointestinal infections, neonatal meningitis, and more severe manifestations like hemolytic uremic syndrome (HUS) and septicemia. These pathogenic effects underscore its relevance in both clinical and environmental microbiology. In ecological terms, KCJK8504's ability to thrive in diverse environments and its pathogenic potential in multiple hosts emphasize the importance of monitoring E. coli strains in public health and food safety contexts. Its presence in both faunal and agricultural habitats suggests a complex interplay between microbial communities and their hosts, which can influence disease dynamics and transmission pathways.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain KCJK8504

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain KCJK8504
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain KCJK8504 NODE_647_length_202_cov_4.800000,

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5196 genes

Non-Coding Genes

200 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna damage-inducible protein yebgFIB82_04300Not AvailableNegative850973 - 85126310717.5
formate-dependent phosphoribosylglycinamide formyltransferaseFIB82_04305Not AvailablePositive851397 - 85257542409.1
khg/kdpg aldolaseFIB82_04310Not AvailableNegative852631 - 85327222285.3
phosphogluconate dehydrataseFIB82_04315Not AvailableNegative853309 - 85512064642.9
glucose-6-phosphate dehydrogenaseFIB82_04320Not AvailableNegative855355 - 85683055707.5
murr/rpir family transcriptional regulatorFIB82_04325Not AvailablePositive857168 - 85803731977.4
pyruvate kinase iiFIB82_04330Not AvailablePositive858165 - 85960751360.3
lauroyl-kdo(2)-lipid iv(a) myristoyltransferaseFIB82_04335Not AvailableNegative859738 - 86070937412.5
murein dd-endopeptidase mepmFIB82_04340Not AvailableNegative860829 - 86215149060.6
zinc abc transporter substrate-binding protein znuaFIB82_04345Not AvailableNegative862167 - 86309933851.3

Displaying genes 1011 – 1020 of 5403 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total