Escherichia coli strain KCJK8638

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain KCJK8638 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe. This strain typically exists in pairs or singles and possesses flagella, enabling its mobility. It thrives optimally at 37°C within a mesophilic temperature range. The strain has a single replicon and two membranes, indicative of its cellular structure. KCJK8638 is host-associated, exhibiting a free-living biotic relationship and can inhabit a wide range of hosts, including Homo sapiens, Gallus gallus, Bos taurus, and various other vertebrates, invertebrates, and even plants such as Solanum lycopersicum and Brassica oleracea var. italica. This strain is notably pathogenic to humans, associated with a myriad of health effects, including urinary tract infections (UTIs), gastrointestinal infections, septicemia, and neonatal meningitis, among others. The extensive pathogenic potential of KCJK8638 highlights its role in significant health issues, including hemolytic uremic syndrome (HUS) and colorectal cancer. The ecological insight from the presence of KCJK8638 in diverse hosts suggests its adaptability and resilience in various environments, potentially impacting both human health and animal well-being. This adaptability may also contribute to its role in foodborne infections, underscoring the importance of monitoring and understanding this strain within clinical and agricultural contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain KCJK8638

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain KCJK8638
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain KCJK8638 NODE_936_length_204_cov_3.857143,

Gene Summary

Adenine Count

1106923 bp

Thymine Count

1110750 bp

Guanine Count

1175471 bp

Cytosine Count

1171926 bp

Genome Length

4565076 bp

Protein-coding Genes

4383 genes

Non-Coding Genes

214 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter permeaseFIC10_09750Not AvailableNegative2028354 - 202935234485.6
sugar abc transporter atp-binding proteinFIC10_09755Not AvailableNegative2029377 - 203088855033.8
sugar abc transporter substrate-binding proteinFIC10_09760Not AvailableNegative2030911 - 20311638969.79
tryptophan synthase subunit alphaFIC10_09765Not AvailableNegative2031321 - 203212728725.8
tryptophan synthase subunit betaFIC10_09770Not AvailableNegative2032127 - 203332042985.6
bifunctional indole-3-glycerol-phosphate synthase trpc/phosphoribosylanthranilate isomerase trpfFIC10_09775Not AvailableNegative2033332 - 203469049363.9
bifunctional anthranilate synthase glutamate amidotransferase component trpg/anthranilate phosphoribosyltransferase trpdFIC10_09780Not AvailableNegative2034694 - 203628956873.4
anthranilate synthase component iFIC10_09785Not AvailableNegative2036289 - 203785157497.7
trp operon leader peptideFIC10_09790Not AvailableNegative2037943 - 20379871723.19
5'-3' exoribonucleaseFIC10_09795Not AvailablePositive2038125 - 203900632581.8

Displaying genes 1951 – 1960 of 4597 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total