Escherichia coli strain KCJK8787

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain KCJK8787 is a gram-negative, rod-shaped bacterium that exists in pairs and singles. It is a facultative anaerobe, capable of thriving in both aerobic and anaerobic environments, with an optimal growth temperature of 37°C, classifying it as mesophilic. This strain possesses flagella, indicating mobility, and has a free-living biotic relationship. KCJK8787 has a broad range of hosts, including Homo sapiens, domestic animals like Gallus gallus (chickens) and Bos taurus (cattle), various mammals, and even some plants such as Solanum lycopersicum (tomatoes) and Brassica oleracea var. italica (broccoli). This diverse host range highlights its ecological adaptability. The strain is associated with numerous health effects, particularly in humans, where it is linked to urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as neonatal meningitis and hemolytic uremic syndrome (HUS). Other health concerns associated with KCJK8787 include peritonitis, septicemia, food poisoning, and various forms of colitis. These infections can result in significant morbidity, including renal failure and cardiovascular diseases. Given its pathogenicity in humans and its ability to inhabit a variety of hosts, E. coli strain KCJK8787 exemplifies the complex interactions between microbial pathogens and their environments. Its presence in both animal and plant hosts suggests a potential for cross-species transmission and underlines the importance of monitoring such strains in public health contexts, particularly concerning food safety and zoonotic disease transmission.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain KCJK8787

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain KCJK8787
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain KCJK8787 NODE_332_length_202_cov_3.120000,

Gene Summary

Adenine Count

1138150 bp

Thymine Count

1142612 bp

Guanine Count

1182239 bp

Cytosine Count

1174275 bp

Genome Length

4637276 bp

Protein-coding Genes

4368 genes

Non-Coding Genes

208 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleoid-associated protein yejkFIC36_04755Not AvailablePositive973418 - 97442537810.6
50s ribosomal protein l25FIC36_04760Not AvailableNegative974564 - 97484810694.0
dead/deah box helicaseFIC36_04765Not AvailableNegative974973 - 97673366443.9
16s rrna pseudouridine(516) synthase rsuaFIC36_04770Not AvailablePositive976882 - 97757725866.8
multidrug efflux mfs transporter bcrFIC36_04775Not AvailablePositive977605 - 97879543355.4
hypothetical proteinFIC36_04780Not AvailablePositive979128 - 97947212525.9
microcin c abc transporter atp-binding protein yejfFIC36_04785Not AvailableNegative979476 - 98106558719.7
abc transporter permeaseFIC36_04790Not AvailableNegative981067 - 98209238094.6
microcin c abc transporter permease yejbFIC36_04795Not AvailableNegative982092 - 98318640362.6
abc transporter substrate-binding proteinFIC36_04800Not AvailableNegative983187 - 98500169644.5

Displaying genes 1031 – 1040 of 4576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total