Escherichia coli strain KCJK8875

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain KCJK8875 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism. This strain is capable of existing in both pairs and singles, and it possesses flagella, enabling mobility. Its optimal growth temperature is 37°C, within the mesophilic temperature range. KCJK8875 is characterized by a single replicon and has a double membrane structure. This strain is primarily host-associated and has a diverse array of potential hosts, including Homo sapiens (humans), Gallus gallus (chickens), and various other mammals, birds, and even some invertebrates. The extensive host range suggests that KCJK8875 plays a significant role in the microbial ecosystems of these organisms. E. coli strain KCJK8875 is associated with a wide variety of health effects, particularly in humans. It has been implicated in urinary tract infections (UTIs), gastrointestinal infections, and conditions such as neonatal meningitis and septicemia. The strain is also linked to more severe outcomes, including hemolytic uremic syndrome (HUS) and various forms of enteric disease. The presence of KCJK8875 in various host species underscores its ecological versatility and pathogenic potential. Its ability to cause significant health issues in both humans and animals highlights the importance of monitoring and understanding this strain in clinical and environmental contexts. Further studies could elucidate its role in disease transmission and its interactions within host microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain KCJK8875

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain KCJK8875
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain KCJK8875 NODE_479_length_212_cov_5.494118,

Gene Summary

Adenine Count

1167382 bp

Thymine Count

1159856 bp

Guanine Count

1203146 bp

Cytosine Count

1205883 bp

Genome Length

4736267 bp

Protein-coding Genes

4508 genes

Non-Coding Genes

245 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rhs repeat proteinFIB50_24380Not AvailableNegative4726900 - 472717310578.4
hypothetical proteinFIB50_24385Not AvailableNegative4727174 - 47274479950.2
recombinase rectFIB50_24390Not AvailablePositive4727448 - 47277209595.46
hypothetical proteinFIB50_24405Not AvailableNegative4728334 - 47285247152.69
glycogen synthesis protein glgsFIB50_24415Not AvailablePositive4728786 - 47288522660.19
glycogen synthesis protein glgsFIB50_24420Not AvailablePositive4729047 - 47291132660.19
hypothetical proteinFIB50_24425Not AvailablePositive4729325 - 47295689267.35
Trna-ileNot AvailableNot AvailablePositive4730264 - 4730338Not Available
elongation factor tuFIB50_24460Not AvailablePositive4730844 - 47310989175.9
hypothetical proteinFIB50_24465Not AvailablePositive4731155 - 47313537853.08

Displaying genes 4731 – 4740 of 4753 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total