Deinococcus radiopugnans ATCC 19172

Kingdom

Thermotogati

Phylum

Deinococcota

Class

Deinococci

Order

Deinococcales

Family

Deinococcaceae

Genus

Deinococcus

Description

Deinococcus radiopugnans ATCC 19172 is a notable bacterium characterized by its presence of flagella, which are essential for motility. This species possesses a single replicon, indicating a streamlined genomic structure that may contribute to its efficiency in cellular processes. The reference accession number for this strain is VDMO00000000.1, which allows researchers to access its genetic information for further study. D. radiopugnans is recognized for its remarkable resilience to environmental stresses, including radiation. This trait is indicative of its potential ecological roles in extreme environments, where it may contribute to biogeochemical cycles and the degradation of hazardous materials. The flagella may also play a role in its adaptability and survival mechanisms, allowing it to navigate various habitats, thus enhancing its ecological versatility. In summary, the combination of motility due to flagella and a single replicon structure positions Deinococcus radiopugnans ATCC 19172 as a significant organism for research, particularly in understanding bacterial resistance to extreme conditions and its potential applications in bioremediation.

Taxonomy

KingdomThermotogati
PhylumDeinococcota
ClassDeinococci
OrderDeinococcales
FamilyDeinococcaceae
GenusDeinococcus
SpeciesDeinococcus radiopugnans
StrainATCC 19172

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Deinococcus radiopugnans ATCC 19172

Gene Summary

Adenine Count

709070 bp

Thymine Count

713757 bp

Guanine Count

1449597 bp

Cytosine Count

1454258 bp

Genome Length

4326682 bp

Protein-coding Genes

4013 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii toxin-antitoxin system vapc family toxinFHR04_17060Not AvailableNegative3579108 - 357949714262.3
type ii toxin-antitoxin system prevent-host-death family antitoxinFHR04_17065Not AvailableNegative3579494 - 35797368901.47
cob(i)yrinic acid a,c-diamide adenosyltransferaseFHR04_17070Not AvailableNegative3579783 - 358040322614.0
abc transporter substrate-binding proteinFHR04_17075Not AvailableNegative3580400 - 358126930622.3
adenosylcobinamide-gdp ribazoletransferaseFHR04_17085Not AvailableNegative3582142 - 358287625298.4
mbl fold metallo-hydrolaseFHR04_17090Not AvailablePositive3583368 - 358431234282.6
duf4142 domain-containing proteinFHR04_17095Not AvailableNegative3584452 - 358494316936.0
catalaseFHR04_17100Not AvailableNegative3585078 - 358592630921.9
iron-siderophore abc transporter substrate-binding proteinFHR04_17105Not AvailablePositive3586816 - 358764029538.6
iron-siderophore abc transporter substrate-binding proteinFHR04_17110Not AvailablePositive3587652 - 358858132889.8

Displaying genes 3351 – 3360 of 4066 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

17 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00014072,5-dichlorohydroquinoneC6H4Cl2O2Chemical structure of 2,5-dichlorohydroquinoneNot available
Average179Da
Monoisotopic177.9588348Da
BASm00016432,5-dichlorocyclohexa-2,5-dien-1,4-diolC6H6Cl2O2Chemical structure of 2,5-dichlorocyclohexa-2,5-dien-1,4-diolNot available
Average181.01Da
Monoisotopic179.9744848Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002759dTDP-beta-L-rhamnoseC16H24N2O15P2Not availableNot available
Average546.316Da
Monoisotopic546.066289237Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm00034334-amino-4-deoxychorismateC10H10NO5Chemical structure of 4-amino-4-deoxychorismate133442-18-9
Average224.193Da
Monoisotopic224.056446006Da
BASm0003789S-sulfanylglutathioneC10H17N3O6S2Chemical structure of S-sulfanylglutathioneNot available
Average339.38Da
Monoisotopic339.0558776Da

Displaying 1–10 of 17 metabolites

Health Effects

No health effects information available for this bacterium.