Pseudomonas sp. Fig-3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. Fig-3 is characterized by possessing a single replicon, which indicates a streamlined genomic structure. This trait may contribute to its adaptability and efficiency in various environments. The organism is cataloged under the accession number VDEW00000000.1, providing a reference for further genomic studies and analyses. The single replicon structure often suggests a potential for rapid growth and reproduction, which can be advantageous in fluctuating ecological niches. Pseudomonas species are well-known for their metabolic versatility and ability to thrive in diverse habitats, including soil, water, and plant surfaces. This adaptability can be attributed to their ability to utilize a wide range of organic compounds as carbon and energy sources. Understanding the genomic features of Pseudomonas sp. Fig-3 can offer insights into its ecological roles, particularly in nutrient cycling and bioremediation processes. Pseudomonas species are often involved in the degradation of pollutants and thus play a critical role in maintaining environmental health. The genomic data associated with this strain may provide further understanding of its functional capabilities and interactions within microbial communities. In summary, the single replicon of Pseudomonas sp. Fig-3 may enhance its adaptability and ecological functionality, emphasizing the significance of these traits in the broader context of microbial ecology and environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. Fig-3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. Fig-3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. Fig-3 Contig_45, whole genome shotgun sequence.

Gene Summary

Adenine Count

1224443 bp

Thymine Count

1236309 bp

Guanine Count

1873556 bp

Cytosine Count

1854231 bp

Genome Length

6188539 bp

Protein-coding Genes

5461 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf4142 domain-containing proteinFHJ31_25190Not AvailableNegative5453636 - 545413918200.8
diguanylate cyclaseFHJ31_25195Not AvailableNegative5454429 - 545577850305.3
glutathione transferaseFHJ31_25205Not AvailableNegative5455997 - 545641315583.5
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeFHJ31_25210Not AvailablePositive5456681 - 545791644951.8
multidrug effflux mfs transporterFHJ31_25215Not AvailablePositive5457929 - 545909240859.1
l-threonine dehydrogenaseFHJ31_25220Not AvailableNegative5459089 - 546023740242.4
duf4917 family proteinFHJ31_25225Not AvailablePositive5460378 - 546139737993.9
duf1508 domain-containing proteinFHJ31_25230Not AvailableNegative5461494 - 546183812136.1
dj-1/pfpi family proteinFHJ31_25235Not AvailableNegative5461907 - 546248820623.8
sam-dependent methyltransferaseFHJ31_25240Not AvailableNegative5462720 - 546393745256.0

Displaying genes 4901 – 4910 of 5558 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.