Pseudomonas sp. Fig-3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. Fig-3 is characterized by possessing a single replicon, which indicates a streamlined genomic structure. This trait may contribute to its adaptability and efficiency in various environments. The organism is cataloged under the accession number VDEW00000000.1, providing a reference for further genomic studies and analyses. The single replicon structure often suggests a potential for rapid growth and reproduction, which can be advantageous in fluctuating ecological niches. Pseudomonas species are well-known for their metabolic versatility and ability to thrive in diverse habitats, including soil, water, and plant surfaces. This adaptability can be attributed to their ability to utilize a wide range of organic compounds as carbon and energy sources. Understanding the genomic features of Pseudomonas sp. Fig-3 can offer insights into its ecological roles, particularly in nutrient cycling and bioremediation processes. Pseudomonas species are often involved in the degradation of pollutants and thus play a critical role in maintaining environmental health. The genomic data associated with this strain may provide further understanding of its functional capabilities and interactions within microbial communities. In summary, the single replicon of Pseudomonas sp. Fig-3 may enhance its adaptability and ecological functionality, emphasizing the significance of these traits in the broader context of microbial ecology and environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. Fig-3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. Fig-3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. Fig-3 Contig_45, whole genome shotgun sequence.

Gene Summary

Adenine Count

1224443 bp

Thymine Count

1236309 bp

Guanine Count

1873556 bp

Cytosine Count

1854231 bp

Genome Length

6188539 bp

Protein-coding Genes

5461 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadh:flavin oxidoreductaseFHJ31_16325Not AvailablePositive3548778 - 354986639968.8
hamp domain-containing proteinFHJ31_16330Not AvailablePositive3550050 - 355172960226.8
hypothetical proteinFHJ31_16335Not AvailablePositive3551824 - 355212911318.6
lysr family transcriptional regulatorFHJ31_16340Not AvailablePositive3552129 - 355247912807.7
lysr family transcriptional regulatorFHJ31_16350Not AvailablePositive3554150 - 355506133756.4
glutathione transferase gstaFHJ31_16355Not AvailableNegative3555121 - 355572322738.3
glutathione-dependent disulfide-bond oxidoreductaseFHJ31_16360Not AvailableNegative3555736 - 355660532402.3
haaap family serine/threonine permeaseFHJ31_16365Not AvailablePositive3557954 - 355923446120.6
bifunctional aconitate hydratase 2/2-methylisocitrate dehydrataseFHJ31_16370Not AvailableNegative3559498 - 356209893667.6
duf1289 domain-containing proteinFHJ31_16375Not AvailablePositive3562508 - 356297818289.2

Displaying genes 3211 – 3220 of 5558 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.