Pseudomonas sp. Fig-3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. Fig-3 is characterized by possessing a single replicon, which indicates a streamlined genomic structure. This trait may contribute to its adaptability and efficiency in various environments. The organism is cataloged under the accession number VDEW00000000.1, providing a reference for further genomic studies and analyses. The single replicon structure often suggests a potential for rapid growth and reproduction, which can be advantageous in fluctuating ecological niches. Pseudomonas species are well-known for their metabolic versatility and ability to thrive in diverse habitats, including soil, water, and plant surfaces. This adaptability can be attributed to their ability to utilize a wide range of organic compounds as carbon and energy sources. Understanding the genomic features of Pseudomonas sp. Fig-3 can offer insights into its ecological roles, particularly in nutrient cycling and bioremediation processes. Pseudomonas species are often involved in the degradation of pollutants and thus play a critical role in maintaining environmental health. The genomic data associated with this strain may provide further understanding of its functional capabilities and interactions within microbial communities. In summary, the single replicon of Pseudomonas sp. Fig-3 may enhance its adaptability and ecological functionality, emphasizing the significance of these traits in the broader context of microbial ecology and environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. Fig-3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. Fig-3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. Fig-3 Contig_45, whole genome shotgun sequence.

Gene Summary

Adenine Count

1224443 bp

Thymine Count

1236309 bp

Guanine Count

1873556 bp

Cytosine Count

1854231 bp

Genome Length

6188539 bp

Protein-coding Genes

5461 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidase c39 family proteinFHJ31_13200Not AvailablePositive2827569 - 282824624218.3
hypothetical proteinFHJ31_13205Not AvailablePositive2828346 - 28285497041.75
d-alanyl-d-alanine endopeptidaseFHJ31_13210Not AvailableNegative2828594 - 282953233952.2
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase foldFHJ31_13215Not AvailableNegative2829802 - 283065630577.1
Trna-argNot AvailableNot AvailablePositive2830938 - 2831014Not Available
Trna-hisNot AvailableNot AvailablePositive2831056 - 2831131Not Available
Trna-leuNot AvailableNot AvailablePositive2831189 - 2831273Not Available
trigger factorFHJ31_13235Not AvailablePositive2831690 - 283300048563.7
atp-dependent clp endopeptidase proteolytic subunit clppFHJ31_13240Not AvailablePositive2833094 - 283373523460.2
atp-dependent clp protease atp-binding subunit clpxFHJ31_13245Not AvailablePositive2833843 - 283512647041.4

Displaying genes 2611 – 2620 of 5558 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.