Salmonella enterica subsp. enterica serovar Derby strain HIY0031

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Salmonella

Description

Salmonella enterica subsp. enterica serovar Derby strain HIY0031 is a Gram-negative bacterium, classified as a chemoorganotroph, which indicates its reliance on organic compounds for energy. This strain exhibits a microaerophilic oxygen requirement, thriving in environments with lower oxygen levels. Morphologically, it is characterized by a spirilla shape and typically appears in chains or as singles. HIY0031 possesses flagella, which are structures that facilitate motility; however, this strain is noted to be non-motile. It has a mesophilic optimal growth temperature of 37°C, which aligns with the typical body temperature of warm-blooded hosts, further indicating its host-associated habitat. The structure of its cell envelope consists of two membranes, a trait common to Gram-negative bacteria. In terms of genetic organization, HIY0031 has one replicon, suggesting a relatively simple genetic architecture. The strain's biotic relationship is classified as free-living, which may allow it to survive outside of host organisms under specific environmental conditions. Understanding the traits of Salmonella enterica serovar Derby strain HIY0031 provides insight into its ecological role. Its adaptation to a microaerophilic environment and mesophilic temperature range suggests an evolutionary relationship with warm-blooded hosts, where it may contribute to the dynamics of gut microbiota or cause infections. The presence of flagella, despite noted non-motility, could imply a potential for environmental persistence or interaction with host tissues, further emphasizing its ecological importance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusSalmonella
SpeciesSalmonella enterica
Strainsubsp. enterica serovar Derby strain HIY0031

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Salmonella enterica subsp. enterica serovar Derby strain HIY0031
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Salmonella enterica subsp. enterica serovar Derby strain HIY0031

Gene Summary

Adenine Count

1155368 bp

Thymine Count

1155937 bp

Guanine Count

1268523 bp

Cytosine Count

1247956 bp

Genome Length

4827784 bp

Protein-coding Genes

4451 genes

Non-Coding Genes

255 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
serine-type d-ala-d-ala carboxypeptidase dacdFG580_013290Not AvailableNegative2745810 - 274698243099.6
thiosulfate reductase cytochrome b subunitFG580_013295Not AvailableNegative2747106 - 274787028520.8
thiosulfate reductase electron transport protein phsbFG580_013300Not AvailableNegative2747867 - 274844521321.3
thiosulfate reductase phsaFG580_013305Not AvailableNegative2748460 - 275073682804.2
spi-1 type iii secretion system effector hect-type e3 ubiquitin transferase sopaFG580_013315Not AvailablePositive2751355 - 275370387034.7
exodeoxyribonuclease iFG580_013320Not AvailablePositive2754070 - 275550054502.5
putrescine/proton symporter plapFG580_013325Not AvailableNegative2755636 - 275699449506.4
membrane protein yoeiFG580_013330Not AvailableNegative2756984 - 27570462217.58
lysr family transcriptional regulatorFG580_013335Not AvailableNegative2757280 - 275819433751.8
sdr family oxidoreductaseFG580_013340Not AvailableNegative2758240 - 275906429663.9

Displaying genes 2771 – 2780 of 4706 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.