Salmonella enterica subsp. enterica serovar Derby strain HIY0031

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Salmonella

Description

Salmonella enterica subsp. enterica serovar Derby strain HIY0031 is a Gram-negative bacterium, classified as a chemoorganotroph, which indicates its reliance on organic compounds for energy. This strain exhibits a microaerophilic oxygen requirement, thriving in environments with lower oxygen levels. Morphologically, it is characterized by a spirilla shape and typically appears in chains or as singles. HIY0031 possesses flagella, which are structures that facilitate motility; however, this strain is noted to be non-motile. It has a mesophilic optimal growth temperature of 37°C, which aligns with the typical body temperature of warm-blooded hosts, further indicating its host-associated habitat. The structure of its cell envelope consists of two membranes, a trait common to Gram-negative bacteria. In terms of genetic organization, HIY0031 has one replicon, suggesting a relatively simple genetic architecture. The strain's biotic relationship is classified as free-living, which may allow it to survive outside of host organisms under specific environmental conditions. Understanding the traits of Salmonella enterica serovar Derby strain HIY0031 provides insight into its ecological role. Its adaptation to a microaerophilic environment and mesophilic temperature range suggests an evolutionary relationship with warm-blooded hosts, where it may contribute to the dynamics of gut microbiota or cause infections. The presence of flagella, despite noted non-motility, could imply a potential for environmental persistence or interaction with host tissues, further emphasizing its ecological importance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusSalmonella
SpeciesSalmonella enterica
Strainsubsp. enterica serovar Derby strain HIY0031

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Salmonella enterica subsp. enterica serovar Derby strain HIY0031
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Salmonella enterica subsp. enterica serovar Derby strain HIY0031

Gene Summary

Adenine Count

1155368 bp

Thymine Count

1155937 bp

Guanine Count

1268523 bp

Cytosine Count

1247956 bp

Genome Length

4827784 bp

Protein-coding Genes

4451 genes

Non-Coding Genes

255 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type 3 dihydrofolate reductaseFG580_006810Not AvailablePositive1411415 - 141189417971.2
bis(5'-nucleosyl)-tetraphosphatase (symmetrical)FG580_006815Not AvailableNegative1412000 - 141284831432.4
co2+/mg2+ efflux protein apagFG580_006820Not AvailableNegative1412859 - 141323613924.6
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsmaFG580_006825Not AvailableNegative1413239 - 141406030518.1
4-hydroxythreonine-4-phosphate dehydrogenase pdxaFG580_006830Not AvailableNegative1414057 - 141504634813.6
peptidylprolyl isomerase suraFG580_006835Not AvailableNegative1415046 - 141633247253.6
lps assembly protein lptdFG580_006840Not AvailableNegative1416386 - 141874689876.3
co-chaperone djlaFG580_006845Not AvailablePositive1419000 - 141981230585.2
bifunctional trna pseudouridine(32) synthase/23s rrna pseudouridine(746) synthase rluaFG580_006850Not AvailableNegative1419907 - 142056624799.0
rna polymerase-associated protein rapaFG580_006855Not AvailableNegative1420578 - 1423484109845.0

Displaying genes 1521 – 1530 of 4706 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.