Pseudomonas sp. ATCC 13985 3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. ATCC 13985 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This organism is part of the diverse genus Pseudomonas, which is known for its metabolic versatility and ecological significance. The strain is cataloged under the accession number VCCM00000000.2, indicating its presence in microbial databases for reference and study. As a member of the Pseudomonas genus, ATCC 13985 may exhibit traits commonly associated with this group, such as the ability to degrade a variety of organic compounds and the potential for bioremediation applications. Pseudomonas species are often found in various environments, including soil, water, and as part of the microbiota of plants and animals. Their adaptability to different ecological niches makes them important players in nutrient cycling and environmental health. The ecological insight from studying Pseudomonas sp. ATCC 13985 lies in its potential roles in biogeochemical processes and its interactions within microbial communities. Understanding the capabilities and behaviors of this bacterium can contribute to our knowledge of microbial ecology and the development of biotechnological applications, including bioremediation and plant growth promotion. Further research on this strain may uncover additional functional traits that enhance its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. ATCC 13985 3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. ATCC 13985 3, whole genome shotgun sequence.

Gene Summary

Adenine Count

1305975 bp

Thymine Count

1321850 bp

Guanine Count

2221755 bp

Cytosine Count

2195597 bp

Genome Length

7045177 bp

Protein-coding Genes

5952 genes

Non-Coding Genes

334 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinFCE86_029560Not AvailableNegative6467071 - 64672777640.29
eal domain-containing response regulatorFCE86_029565Not AvailablePositive6467593 - 646881045126.3
response regulator transcription factorFCE86_029570Not AvailablePositive6469008 - 646970925590.1
transporter substrate-binding domain-containing proteinFCE86_029575Not AvailablePositive6469794 - 6473423133979.0
trypsin-like peptidase domain-containing proteinFCE86_029580Not AvailableNegative6473472 - 647405020634.1
tolc family proteinFCE86_029585Not AvailableNegative6474378 - 647602760031.8
hlyd family type i secretion periplasmic adaptor subunitFCE86_029590Not AvailableNegative6476030 - 647727746035.0
type i secretion system permease/atpaseFCE86_029595Not AvailableNegative6477277 - 647955682072.3
ompa family proteinFCE86_029600Not AvailableNegative6480050 - 648098234135.4
ompa family proteinFCE86_029605Not AvailableNegative6481083 - 648197331695.5

Displaying genes 5901 – 5910 of 6286 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.