Pseudomonas sp. ATCC 13985 3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. ATCC 13985 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This organism is part of the diverse genus Pseudomonas, which is known for its metabolic versatility and ecological significance. The strain is cataloged under the accession number VCCM00000000.2, indicating its presence in microbial databases for reference and study. As a member of the Pseudomonas genus, ATCC 13985 may exhibit traits commonly associated with this group, such as the ability to degrade a variety of organic compounds and the potential for bioremediation applications. Pseudomonas species are often found in various environments, including soil, water, and as part of the microbiota of plants and animals. Their adaptability to different ecological niches makes them important players in nutrient cycling and environmental health. The ecological insight from studying Pseudomonas sp. ATCC 13985 lies in its potential roles in biogeochemical processes and its interactions within microbial communities. Understanding the capabilities and behaviors of this bacterium can contribute to our knowledge of microbial ecology and the development of biotechnological applications, including bioremediation and plant growth promotion. Further research on this strain may uncover additional functional traits that enhance its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. ATCC 13985 3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. ATCC 13985 3, whole genome shotgun sequence.

Gene Summary

Adenine Count

1305975 bp

Thymine Count

1321850 bp

Guanine Count

2221755 bp

Cytosine Count

2195597 bp

Genome Length

7045177 bp

Protein-coding Genes

5952 genes

Non-Coding Genes

334 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phospholipase d family proteinFCE86_009230Not AvailablePositive1919804 - 192134257004.1
mfs transporterFCE86_009235Not AvailableNegative1921440 - 192258840415.0
aldehyde dehydrogenaseFCE86_009240Not AvailableNegative1922732 - 192422552824.3
cupin domain-containing proteinFCE86_009245Not AvailablePositive1924461 - 192482313584.9
50s ribosomal protein l33FCE86_009250Not AvailableNegative1924882 - 19250376004.39
50s ribosomal protein l28FCE86_009255Not AvailableNegative1925049 - 19252828937.99
abc transporter substrate-binding proteinFCE86_009260Not AvailablePositive1925827 - 192741657948.9
jab domain-containing proteinFCE86_009265Not AvailableNegative1927424 - 192809824933.3
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabcFCE86_009270Not AvailablePositive1928230 - 192943842867.9
dutp diphosphataseFCE86_009275Not AvailablePositive1929444 - 192989916017.4

Displaying genes 2101 – 2110 of 6286 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.