Pseudomonas sp. ATCC 13985 3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. ATCC 13985 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This organism is part of the diverse genus Pseudomonas, which is known for its metabolic versatility and ecological significance. The strain is cataloged under the accession number VCCM00000000.2, indicating its presence in microbial databases for reference and study. As a member of the Pseudomonas genus, ATCC 13985 may exhibit traits commonly associated with this group, such as the ability to degrade a variety of organic compounds and the potential for bioremediation applications. Pseudomonas species are often found in various environments, including soil, water, and as part of the microbiota of plants and animals. Their adaptability to different ecological niches makes them important players in nutrient cycling and environmental health. The ecological insight from studying Pseudomonas sp. ATCC 13985 lies in its potential roles in biogeochemical processes and its interactions within microbial communities. Understanding the capabilities and behaviors of this bacterium can contribute to our knowledge of microbial ecology and the development of biotechnological applications, including bioremediation and plant growth promotion. Further research on this strain may uncover additional functional traits that enhance its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. ATCC 13985 3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. ATCC 13985 3, whole genome shotgun sequence.

Gene Summary

Adenine Count

1305975 bp

Thymine Count

1321850 bp

Guanine Count

2221755 bp

Cytosine Count

2195597 bp

Genome Length

7045177 bp

Protein-coding Genes

5952 genes

Non-Coding Genes

334 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycine-betaine demethylase subunit gbcbFCE86_007705Not AvailableNegative1596513 - 159761340557.6
hypothetical proteinFCE86_007710Not AvailablePositive1597656 - 15978868861.82
glycine-betaine demethylase subunit gbcaFCE86_007715Not AvailablePositive1597898 - 159919348914.6
electron transfer flavoprotein subunit alpha/fixb family proteinFCE86_007725Not AvailableNegative1600821 - 160204143191.6
dimethylglycine demethylation protein dgcbFCE86_007730Not AvailableNegative1602041 - 160399070169.7
dimethylglycine demethylation protein dgcaFCE86_007735Not AvailableNegative1604154 - 160621475568.7
hydrocarbon binding proteinFCE86_007740Not AvailableNegative1606230 - 160676019753.6
membrane dipeptidaseFCE86_007745Not AvailableNegative1606925 - 160790235995.0
hypothetical proteinFCE86_007750Not AvailablePositive1607928 - 16081136463.85
duf1311 domain-containing proteinFCE86_007755Not AvailablePositive1608130 - 160853114432.8

Displaying genes 1801 – 1810 of 6286 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.