Pseudomonas edaphica strain RD25

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas edaphica strain RD25 is characterized by having a single replicon, which indicates a streamlined genetic structure for its cell division and replication processes. The strain is cataloged under the accession number VBVZ00000000.1, providing a reference point for genomic studies and further research. As a member of the Pseudomonas genus, Pseudomonas edaphica strains are often associated with diverse ecological niches, including soil environments. This particular strain may play a role in soil health and nutrient cycling, which are crucial for maintaining ecosystem balance. The single replicon trait suggests a potential adaptability to various environmental conditions, allowing for efficient resource utilization in its native habitat. The genomic insights gained from the accession number VBVZ00000000.1 can facilitate further exploration into the metabolic pathways and ecological functions of Pseudomonas edaphica strain RD25, contributing to our understanding of its role in soil microbiomes. This information is valuable for applications in bioremediation and sustainable agriculture, where the beneficial traits of soil bacteria can be harnessed to improve soil quality and plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas edaphica
Strainstrain RD25

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas edaphica strain RD25
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas edaphica strain RD25 NODE_1155_length_500_cov_2.18499,

Gene Summary

Adenine Count

1344006 bp

Thymine Count

1355180 bp

Guanine Count

2019007 bp

Cytosine Count

2016787 bp

Genome Length

6734981 bp

Protein-coding Genes

6438 genes

Non-Coding Genes

132 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iii secretion proteinFEM54_24950Not AvailablePositive5193836 - 519424615421.4
escc/yscc/hrcc family type iii secretion system outer membrane ring proteinFEM54_24955Not AvailablePositive5194261 - 519639078911.6
nad(p)-dependent oxidoreductaseFEM54_24960Not AvailablePositive5196391 - 519670911707.6
smp-30/gluconolactonase/lre family proteinFEM54_24965Not AvailablePositive5196740 - 519761531558.1
trap transporter substrate-binding proteinFEM54_24970Not AvailablePositive5197667 - 519862934931.1
trap transporter small permeaseFEM54_24975Not AvailablePositive5198694 - 519922119300.4
trap transporter large permeaseFEM54_24980Not AvailablePositive5199221 - 520050145299.2
aldose 1-epimeraseFEM54_24985Not AvailablePositive5200501 - 520116824469.2
lipid iv(a) 4-amino-4-deoxy-l-arabinosyltransferaseFEM54_24990Not AvailableNegative5201169 - 520268356617.1
4-deoxy-4-formamido-l-arabinose- phosphoundecaprenol deformylaseFEM54_24995Not AvailableNegative5202680 - 520356432457.7

Displaying genes 4871 – 4880 of 6570 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.