Pseudomonas edaphica strain RD25

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas edaphica strain RD25 is characterized by having a single replicon, which indicates a streamlined genetic structure for its cell division and replication processes. The strain is cataloged under the accession number VBVZ00000000.1, providing a reference point for genomic studies and further research. As a member of the Pseudomonas genus, Pseudomonas edaphica strains are often associated with diverse ecological niches, including soil environments. This particular strain may play a role in soil health and nutrient cycling, which are crucial for maintaining ecosystem balance. The single replicon trait suggests a potential adaptability to various environmental conditions, allowing for efficient resource utilization in its native habitat. The genomic insights gained from the accession number VBVZ00000000.1 can facilitate further exploration into the metabolic pathways and ecological functions of Pseudomonas edaphica strain RD25, contributing to our understanding of its role in soil microbiomes. This information is valuable for applications in bioremediation and sustainable agriculture, where the beneficial traits of soil bacteria can be harnessed to improve soil quality and plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas edaphica
Strainstrain RD25

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas edaphica strain RD25
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas edaphica strain RD25 NODE_1155_length_500_cov_2.18499,

Gene Summary

Adenine Count

1344006 bp

Thymine Count

1355180 bp

Guanine Count

2019007 bp

Cytosine Count

2016787 bp

Genome Length

6734981 bp

Protein-coding Genes

6438 genes

Non-Coding Genes

132 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcriptional regulatorFEM54_24425Not AvailableNegative5092767 - 509316815073.2
d-arabinose 5-phosphate isomeraseFEM54_24430Not AvailableNegative5093499 - 50936445244.29
atp-binding cassette domain-containing proteinFEM54_24435Not AvailablePositive5093869 - 509467829408.9
lipid asymmetry maintenance abc transporter permease subunit mlaeFEM54_24440Not AvailablePositive5094678 - 509547528328.2
outer membrane lipid asymmetry maintenance protein mladFEM54_24445Not AvailablePositive5095475 - 509594216376.0
abc transporter substrate-binding proteinFEM54_24450Not AvailablePositive5095954 - 509660723748.3
stas domain-containing proteinFEM54_24455Not AvailablePositive5096604 - 509690910746.0
bola family transcriptional regulatorFEM54_24460Not AvailablePositive5097024 - 50972638903.7
udp-n-acetylglucosamine 1-carboxyvinyltransferaseFEM54_24465Not AvailablePositive5097287 - 509849642888.3
hypothetical proteinFEM54_24470Not AvailablePositive5098510 - 50986926042.22

Displaying genes 4771 – 4780 of 6570 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.