Pseudomonas edaphica strain RD25

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas edaphica strain RD25 is characterized by having a single replicon, which indicates a streamlined genetic structure for its cell division and replication processes. The strain is cataloged under the accession number VBVZ00000000.1, providing a reference point for genomic studies and further research. As a member of the Pseudomonas genus, Pseudomonas edaphica strains are often associated with diverse ecological niches, including soil environments. This particular strain may play a role in soil health and nutrient cycling, which are crucial for maintaining ecosystem balance. The single replicon trait suggests a potential adaptability to various environmental conditions, allowing for efficient resource utilization in its native habitat. The genomic insights gained from the accession number VBVZ00000000.1 can facilitate further exploration into the metabolic pathways and ecological functions of Pseudomonas edaphica strain RD25, contributing to our understanding of its role in soil microbiomes. This information is valuable for applications in bioremediation and sustainable agriculture, where the beneficial traits of soil bacteria can be harnessed to improve soil quality and plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas edaphica
Strainstrain RD25

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas edaphica strain RD25
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas edaphica strain RD25 NODE_1155_length_500_cov_2.18499,

Gene Summary

Adenine Count

1344006 bp

Thymine Count

1355180 bp

Guanine Count

2019007 bp

Cytosine Count

2016787 bp

Genome Length

6734981 bp

Protein-coding Genes

6438 genes

Non-Coding Genes

132 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadh-quinone oxidoreductase subunit nuogFEM54_08410Not AvailablePositive1836027 - 183874198266.2
nadh-quinone oxidoreductase subunit nuohFEM54_08415Not AvailablePositive1838738 - 183974537556.7
nadh-quinone oxidoreductase subunit nuoiFEM54_08420Not AvailablePositive1839757 - 184030520446.6
nadh-quinone oxidoreductase subunit jFEM54_08425Not AvailablePositive1840315 - 184081817791.4
nadh-quinone oxidoreductase subunit nuokFEM54_08430Not AvailablePositive1840821 - 184112910968.0
nadh-quinone oxidoreductase subunit lFEM54_08435Not AvailablePositive1841126 - 184297966459.4
nadh-quinone oxidoreductase subunit mFEM54_08440Not AvailablePositive1843029 - 184456155909.0
nadh-quinone oxidoreductase subunit nuonFEM54_08445Not AvailablePositive1844569 - 184603251941.4
toxinFEM54_08450Not AvailablePositive1846273 - 184662313804.5
transcriptional regulatorFEM54_08455Not AvailablePositive1846613 - 18468157798.45

Displaying genes 1681 – 1690 of 6570 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.