Phragmitibacter flavus strain MG-N-17

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Verrucomicrobiia

Order

Verrucomicrobiales

Family

Verrucomicrobiaceae

Genus

Phragmitibacter

Description

Phragmitibacter flavus strain MG-N-17 is characterized by having a single replicon, which is crucial for its genetic stability and replication processes. The strain is cataloged under the accession number VAUV00000000.1, indicating its entry into biological databases for further study and reference. This strain belongs to the genus Phragmitibacter, which is known for its association with wetland environments. The presence of Phragmitibacter flavus in such habitats suggests its potential role in the ecological dynamics of these systems. Wetlands are critical ecosystems that provide various services, including water filtration, carbon storage, and habitat for diverse organisms. The singular replicon structure of Phragmitibacter flavus MG-N-17 may contribute to its adaptability and resilience within its ecological niche. This genomic characteristic could facilitate efficient gene regulation and metabolic processes, allowing the strain to thrive in fluctuating environmental conditions typical of wetland habitats. Thus, Phragmitibacter flavus strain MG-N-17 may play a significant role in maintaining the ecological balance and health of wetland ecosystems, highlighting the importance of microbial diversity in these environments.

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassVerrucomicrobiia
OrderVerrucomicrobiales
FamilyVerrucomicrobiaceae
GenusPhragmitibacter
SpeciesPhragmitibacter flavus
Strainstrain MG-N-17

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phragmitibacter flavus strain MG-N-17

Gene Summary

Adenine Count

1277244 bp

Thymine Count

1271554 bp

Guanine Count

1684543 bp

Cytosine Count

1677592 bp

Genome Length

5910933 bp

Protein-coding Genes

4729 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tetratricopeptide repeat proteinFEM03_01105Not AvailablePositive252488 - 25424266028.1
ftsx-like permease family proteinFEM03_01110Not AvailablePositive254322 - 25668886704.0
hlyd family efflux transporter periplasmic adaptor subunitFEM03_01115Not AvailablePositive256739 - 25800445467.7
sulfataseFEM03_01120Not AvailablePositive258572 - 25999652955.2
helix-turn-helix domain-containing proteinFEM03_01125Not AvailablePositive260092 - 26158254497.2
methylated-dna--[protein]-cysteine s-methyltransferaseFEM03_01130Not AvailablePositive261579 - 26208518235.6
fkbp-type peptidyl-prolyl cis-trans isomeraseFEM03_01135Not AvailablePositive262150 - 26254514381.0
hypothetical proteinFEM03_01140Not AvailableNegative262600 - 26310617904.5
hypothetical proteinFEM03_01145Not AvailableNegative263127 - 26363918087.9
trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miabFEM03_01150Not AvailablePositive263734 - 26511051836.4

Displaying genes 221 – 230 of 4777 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

22 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001971heptanedioateC7H10O4Chemical structure of heptanedioateNot available
Average158.154Da
Monoisotopic158.059006Da
BASm00019783-(4-hydroxyphenyl)pyruvateC9H7O4Chemical structure of 3-(4-hydroxyphenyl)pyruvateNot available
Average179.1495Da
Monoisotopic179.034433712Da
BASm00026033-hydroxy-2-methylpropanoyl-CoAC25H38N7O18P3SChemical structure of 3-hydroxy-2-methylpropanoyl-CoANot available
Average849.59Da
Monoisotopic849.1228839Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da

Displaying 1–10 of 22 metabolites

Health Effects

No health effects information available for this bacterium.