Pseudomonas nitroreducens strain DSM 9128

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas nitroreducens strain DSM 9128 is characterized by having a single replicon, which indicates a streamlined genomic structure possibly conducive to its adaptability and metabolic versatility. The strain's genomic data is cataloged under the accession number VASG00000000.1, which provides a basis for further research and characterization. As a member of the Pseudomonas genus, it is likely that Pseudomonas nitroreducens possesses traits common to this group, such as the ability to thrive in diverse environments and a potential for bioremediation. Pseudomonas species are known for their metabolic capabilities, including the reduction of nitro compounds, which aligns with the species name "nitroreducens." This metabolic trait can be ecologically significant, as it suggests a role in the degradation of pollutants in various environmental settings. Overall, Pseudomonas nitroreducens strain DSM 9128 represents an important microorganism with potential applications in environmental microbiology, particularly in the context of bioremediation, where it may contribute to the detoxification of environments contaminated with nitroaromatic compounds. Understanding its genomic structure and metabolic pathways could further elucidate its ecological roles and applications in biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas nitroreducens
Strainstrain DSM 9128

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas nitroreducens strain DSM 9128
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas nitroreducens strain DSM 9128 scf_32389_15, whole

Gene Summary

Adenine Count

1152083 bp

Thymine Count

1164173 bp

Guanine Count

2198441 bp

Cytosine Count

2192830 bp

Genome Length

6707527 bp

Protein-coding Genes

5920 genes

Non-Coding Genes

218 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Putative repressor proteinFEA48_11090Not AvailableNegative2403021 - 24032367911.53
hypothetical proteinFEA48_11095Not AvailableNegative2403373 - 240410428098.8
Putative prophage integraseFEA48_11100Not AvailableNegative2404106 - 240531145072.9
AttrNot AvailableNot AvailablePositive2408284 - 2408299Not Available
AttlNot AvailableNot AvailablePositive4350236 - 4350247Not Available
Abc transporterFEA48_19985Not AvailablePositive4353009 - 435377628048.2
pirin family proteinFEA48_19990Not AvailablePositive4353903 - 435460125434.0
O-methyltransferaseFEA48_19995Not AvailableNegative4354660 - 435532224242.0
PeptidaseFEA48_20000Not AvailableNegative4355338 - 435586818606.5
Tail proteinFEA48_20005Not AvailableNegative4355949 - 435657522883.2

Displaying genes 61 – 70 of 6138 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

334 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0002026acrylateC3H3O2Chemical structure of acrylate10344-93-1
Average71.056Da
Monoisotopic71.013852917Da

Displaying 1–10 of 334 metabolites

Health Effects

No health effects information available for this bacterium.