Polaribacter aestuariivivens strain DBTF-3

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Polaribacter

Description

Polaribacter aestuariivivens strain DBTF-3 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain is notable for having a single replicon, which is significant in understanding its genomic organization and replication processes. The sequence data for this strain can be accessed under the accession number VANR00000000.1. The classification of Polaribacter aestuariivivens within the genus Polaribacter suggests a potential ecological role in aquatic environments, particularly estuarine ecosystems. Members of the Polaribacter genus are typically associated with marine habitats and are known for their ability to degrade organic matter. This trait may contribute to nutrient cycling and energy flow within their respective environments. Given its Gram-negative nature, Polaribacter aestuariivivens strain DBTF-3 may possess unique outer membrane characteristics that allow it to interact with its surroundings effectively. The ecological insight derived from this strain emphasizes the importance of Polaribacter species in maintaining the health of estuarine ecosystems, where they may play a critical role in biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPolaribacter
SpeciesPolaribacter aestuariivivens
Strainstrain DBTF-3

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Polaribacter aestuariivivens strain DBTF-3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Polaribacter aestuariivivens strain DBTF-3 contig14, whole genome

Gene Summary

Adenine Count

1122084 bp

Thymine Count

1113725 bp

Guanine Count

469720 bp

Cytosine Count

473036 bp

Genome Length

3178572 bp

Protein-coding Genes

2730 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna metabolism proteinFDT66_12100Not AvailablePositive2754612 - 275538830753.7
hypothetical proteinFDT66_12105Not AvailableNegative2755394 - 275595722424.5
cytochrome c biogenesis proteinFDT66_12110Not AvailablePositive2756071 - 2759217119598.0
duf2892 domain-containing proteinFDT66_12115Not AvailablePositive2759295 - 275981019712.0
lysm peptidoglycan-binding domain-containing proteinFDT66_12120Not AvailableNegative2759890 - 276153962878.3
glutamine-hydrolyzing gmp synthaseFDT66_12125Not AvailableNegative2761530 - 276306556366.4
3-oxoacyl-acp synthase iii family proteinFDT66_12130Not AvailableNegative2763192 - 276425639294.5
group iii truncated hemoglobinFDT66_12135Not AvailableNegative2764378 - 276475815138.3
cytidine deaminaseFDT66_12140Not AvailableNegative2764822 - 276530417621.4
type ix secretion system outer membrane channel protein porvFDT66_12145Not AvailableNegative2765382 - 276648840211.0

Displaying genes 2411 – 2420 of 2774 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da

Displaying 1–6 of 6 metabolites

Health Effects

No health effects information available for this bacterium.