Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain 144bp-OG3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418061 bp
Thymine Count
1414440 bp
Guanine Count
971104 bp
Cytosine Count
957116 bp
Genome Length
4760721 bp
Protein-coding Genes
4126 genes
Non-Coding Genes
87 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | FD718_14450 | Not Available | Positive | 3198347 - 3198817 | 17458.2 |
| penicillin-binding protein 2 | FD718_14455 | Not Available | Positive | 3198824 - 3200785 | 74111.1 |
| peptidoglycan glycosyltransferase mrdb | FD718_14460 | Not Available | Positive | 3200782 - 3201903 | 40839.8 |
| septal ring lytic transglycosylase rlpa family protein | FD718_14465 | Not Available | Positive | 3201904 - 3202773 | 32397.8 |
| d-alanyl-d-alanine carboxypeptidase | FD718_14470 | Not Available | Positive | 3203008 - 3204183 | 42698.1 |
| duf493 family protein | FD718_14475 | Not Available | Positive | 3204379 - 3204651 | 10156.3 |
| lipoyl(octanoyl) transferase lipb | FD718_14480 | Not Available | Positive | 3204771 - 3205418 | 24012.7 |
| lipoyl synthase | FD718_14485 | Not Available | Positive | 3205418 - 3206386 | 36437.0 |
| outer membrane protein assembly factor bamc | FD718_14490 | Not Available | Negative | 3206469 - 3207482 | 37300.8 |
| 4-hydroxy-tetrahydrodipicolinate synthase | FD718_14495 | Not Available | Negative | 3207514 - 3208392 | 31110.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


